STRINGSTRING
BN2166_0004120 BN2166_0004120 BN2166_0047880 BN2166_0047880 BN2166_0044760 BN2166_0044760 BN2166_0040560 BN2166_0040560 BN2166_0038440 BN2166_0038440 BN2166_0015970 BN2166_0015970 BN2166_0032090 BN2166_0032090 BN2166_0039200 BN2166_0039200 BN2166_0039050 BN2166_0039050 BN2166_0028200 BN2166_0028200 BN2166_0049110 BN2166_0049110 BN2166_0052980 BN2166_0052980 BN2166_0064900 BN2166_0064900 BN2166_0040470 BN2166_0040470 BN2166_0058010 BN2166_0058010 BN2166_0063640 BN2166_0063640 BN2166_0028100 BN2166_0028100 BN2166_0010510 BN2166_0010510 BN2166_0011180 BN2166_0011180 BN2166_0009130 BN2166_0009130 BN2166_0011190 BN2166_0011190 BN2166_0006160 BN2166_0006160 BN2166_0015600 BN2166_0015600 BN2166_0004480 BN2166_0004480 BN2166_0003040 BN2166_0003040 BN2166_0010750 BN2166_0010750 BN2166_0001440 BN2166_0001440 BN2166_0005150 BN2166_0005150 BN2166_0064690 BN2166_0064690 BN2166_0046420 BN2166_0046420 BN2166_0047320 BN2166_0047320 BN2166_0049570 BN2166_0049570 BN2166_0074450 BN2166_0074450 BN2166_0064910 BN2166_0064910 BN2166_0054770 BN2166_0054770 BN2166_0074040 BN2166_0074040 BN2166_0059270 BN2166_0059270 BN2166_0064920 BN2166_0064920 BN2166_0072770 BN2166_0072770 BN2166_0035170 BN2166_0035170 BN2166_0030890 BN2166_0030890 BN2166_0011020 BN2166_0011020 BN2166_0035600 BN2166_0035600 BN2166_0033550 BN2166_0033550 BN2166_0006320 BN2166_0006320 BN2166_0004570 BN2166_0004570
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0004120annotation not available (1050 aa)
BN2166_0047880annotation not available (1235 aa)
BN2166_0044760Protein kinase-like domain-containing protein. (671 aa)
BN2166_0040560RING-type domain-containing protein. (318 aa)
BN2166_0038440annotation not available (757 aa)
BN2166_0015970DUF1767 domain-containing protein. (430 aa)
BN2166_0032090BY PROTMAP: gi|647400090|emb|CDR45195.1| RHTO0S10e06590g1_1 [Rhodosporidium toruloides]. (965 aa)
BN2166_0039200annotation not available (929 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0028200FGENESH: predicted gene_5.365 protein. (188 aa)
BN2166_0049110FGENESH: predicted gene_9.257 protein. (762 aa)
BN2166_0052980annotation not available (730 aa)
BN2166_0064900Uncharacterized protein. (189 aa)
BN2166_0040470BY PROTMAP: gi|647401525|emb|CDR47825.1| RHTO0S15e02454g1_1 [Rhodosporidium toruloides]. (1530 aa)
BN2166_0058010annotation not available (933 aa)
BN2166_0063640Belongs to the aldehyde dehydrogenase family. (595 aa)
BN2166_0028100Protein kinase domain-containing protein. (302 aa)
BN2166_0010510Pol II transcription elongation factor. (587 aa)
BN2166_0011180BY PROTMAP: gi|342319958|gb|EGU11903.1| RAD51-like protein 2 ISS [Rhodotorula glutinis ATCC 204091]. (297 aa)
BN2166_0009130Restriction endonuclease type II-like protein. (332 aa)
BN2166_0011190DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1245 aa)
BN2166_0006160annotation not available (269 aa)
BN2166_0015600annotation not available (1265 aa)
BN2166_0004480SUN domain-containing protein. (1225 aa)
BN2166_0003040BY PROTMAP: gi|342319371|gb|EGU11320.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (682 aa)
BN2166_0010750Uncharacterized protein. (927 aa)
BN2166_0001440annotation not available (361 aa)
BN2166_0005150annotation not available (663 aa)
BN2166_0064690BY PROTMAP: gi|342319058|gb|EGU11010.1| putative RAD57 protein [Rhodotorula glutinis ATCC 204091]. (556 aa)
BN2166_0046420Belongs to the RecA family. (319 aa)
BN2166_0047320BY PROTMAP: gi|342319987|gb|EGU11932.1| putative Endonuclease [Rhodotorula glutinis ATCC 204091]. (1073 aa)
BN2166_0049570annotation not available (921 aa)
BN2166_0074450DNA repair protein, SNF2 family. (852 aa)
BN2166_0064910FGENESH: predicted gene_14.41 protein. (914 aa)
BN2166_0054770ERCC4 domain-containing protein. (1060 aa)
BN2166_0074040annotation not available (2701 aa)
BN2166_0059270annotation not available (736 aa)
BN2166_0064920AAA_23 domain-containing protein. (197 aa)
BN2166_0072770Rad51 domain-containing protein. (361 aa)
BN2166_0035170FGENESH: predicted gene_6.439 protein. (771 aa)
BN2166_0030890DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1591 aa)
BN2166_0011020FGENESH: predicted gene_2.271 protein. (1103 aa)
BN2166_0035600DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1012 aa)
BN2166_0033550Thyroid receptor-interacting protein 13. (552 aa)
BN2166_0006320Rad51-associated protein Brh2. (1137 aa)
BN2166_0004570DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (345 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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