27 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0074240	BY PROTMAP: gi\|647401048\|emb\|CDR46990.1\| RHTO0S13e04478g1_1 [Rhodosporidium toruloides]; Belongs to the protein kinase superfamily. (294 aa)
	BN2166_0073200	Serine/threonine-protein phosphatase. (306 aa)
	BN2166_0066570	mRNA stability protein; Plays an essential role in initiation of the G0 program by preventing the degradation of specific nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway. (139 aa)
	BN2166_0010750	Uncharacterized protein. (927 aa)
	BN2166_0019600	Dfp1/Him1, central region-domain containing protein. (719 aa)
	BN2166_0019750	FGENESH: predicted gene_3.426 protein. (329 aa)
	BN2166_0016210	annotation not available (705 aa)
	BN2166_0019510	ANAPC5 domain-containing protein. (680 aa)
	BN2166_0019760	annotation not available (230 aa)
	BN2166_0032950	annotation not available (781 aa)
	BN2166_0042300	Cell division control protein 16. (727 aa)
	BN2166_0030710	Protein-tyrosine phosphatase-like protein. (823 aa)
	BN2166_0019470	annotation not available (650 aa)
	BN2166_0036530	Putative 20S cyclosome subunit BimA/Nuc2/Cdc27. (921 aa)
	BN2166_0038110	annotation not available (926 aa)
	BN2166_0041690	BY PROTMAP: gi\|342321638\|gb\|EGU13571.1\| Cysteine synthase [Rhodotorula glutinis ATCC 204091]. (379 aa)
	BN2166_0045430	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (328 aa)
	BN2166_0044760	Protein kinase-like domain-containing protein. (671 aa)
	BN2166_0058050	RING finger domain-containing protein. (128 aa)
	BN2166_0060000	WD40-repeat-containing domain protein. (599 aa)
	BN2166_0058590	BY PROTMAP: gi\|647398513\|emb\|CDR42529.1\| RHTO0S07e00518g1_1 [Rhodosporidium toruloides]. (562 aa)
	BN2166_0058130	FGENESH: predicted gene_11.309 protein. (141 aa)
	BN2166_0070700	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (319 aa)
	BN2166_0072000	BY PROTMAP: gi\|342320789\|gb\|EGU12728.1\| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (1449 aa)
	BN2166_0047770	Uncharacterized protein. (524 aa)
	BN2166_0051170	BY PROTMAP: gi\|342321247\|gb\|EGU13181.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (437 aa)
	BN2166_0053470	BY PROTMAP: gi\|599157340\|gb\|EYE96449.1\| ras small GTPase [Aspergillus ruber CBS 135680]. (202 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0010750	BN2166_0016210	A0A0K3C6A6	A0A0K3CB45	Uncharacterized protein.	annotation not available	0.895
BN2166_0010750	BN2166_0019470	A0A0K3C6A6	A0A0K3CFV8	Uncharacterized protein.	annotation not available	0.850
BN2166_0010750	BN2166_0019510	A0A0K3C6A6	A0A0K3CC12	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.762
BN2166_0010750	BN2166_0019600	A0A0K3C6A6	A0A0K3C8N5	Uncharacterized protein.	Dfp1/Him1, central region-domain containing protein.	0.931
BN2166_0010750	BN2166_0019750	A0A0K3C6A6	A0A0K3C8P9	Uncharacterized protein.	FGENESH: predicted gene_3.426 protein.	0.948
BN2166_0010750	BN2166_0019760	A0A0K3C6A6	A0A0K3CC36	Uncharacterized protein.	annotation not available	0.948
BN2166_0010750	BN2166_0030710	A0A0K3C6A6	A0A0K3CFA7	Uncharacterized protein.	Protein-tyrosine phosphatase-like protein.	0.978
BN2166_0010750	BN2166_0036530	A0A0K3C6A6	A0A0K3CGU5	Uncharacterized protein.	Putative 20S cyclosome subunit BimA/Nuc2/Cdc27.	0.915
BN2166_0010750	BN2166_0038110	A0A0K3C6A6	A0A0K3CHD7	Uncharacterized protein.	annotation not available	0.974
BN2166_0010750	BN2166_0042300	A0A0K3C6A6	A0A0K3CF90	Uncharacterized protein.	Cell division control protein 16.	0.918
BN2166_0010750	BN2166_0044760	A0A0K3C6A6	A0A0K3CJD1	Uncharacterized protein.	Protein kinase-like domain-containing protein.	0.671
BN2166_0010750	BN2166_0045430	A0A0K3C6A6	A0A0K3CJ54	Uncharacterized protein.	Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.	0.920
BN2166_0010750	BN2166_0051170	A0A0K3C6A6	A0A0K3CPZ6	Uncharacterized protein.	BY PROTMAP: gi\|342321247\|gb\|EGU13181.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].	0.478
BN2166_0010750	BN2166_0053470	A0A0K3C6A6	A0A0K3CQL0	Uncharacterized protein.	BY PROTMAP: gi\|599157340\|gb\|EYE96449.1\| ras small GTPase [Aspergillus ruber CBS 135680].	0.979
BN2166_0010750	BN2166_0058050	A0A0K3C6A6	A0A0K3CJV0	Uncharacterized protein.	RING finger domain-containing protein.	0.724
BN2166_0010750	BN2166_0058130	A0A0K3C6A6	A0A0K3CMP1	Uncharacterized protein.	FGENESH: predicted gene_11.309 protein.	0.724
BN2166_0010750	BN2166_0058590	A0A0K3C6A6	A0A0K3CM24	Uncharacterized protein.	BY PROTMAP: gi\|647398513\|emb\|CDR42529.1\| RHTO0S07e00518g1_1 [Rhodosporidium toruloides].	0.678
BN2166_0010750	BN2166_0060000	A0A0K3C6A6	A0A0K3CKE5	Uncharacterized protein.	WD40-repeat-containing domain protein.	0.938
BN2166_0010750	BN2166_0070700	A0A0K3C6A6	A0A0K3CNK3	Uncharacterized protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.780
BN2166_0010750	BN2166_0073200	A0A0K3C6A6	A0A061AHA4	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.970

page 1 of 14

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About