STRINGSTRING
BN2166_0007580 BN2166_0007580 BN2166_0034040 BN2166_0034040 BN2166_0034640 BN2166_0034640 BN2166_0035760 BN2166_0035760 BN2166_0035770 BN2166_0035770 BN2166_0055130 BN2166_0055130 BN2166_0066550 BN2166_0066550 BN2166_0057010 BN2166_0057010 BN2166_0073830 BN2166_0073830
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0007580Rho GTPase activation protein. (529 aa)
BN2166_0034040annotation not available (542 aa)
BN2166_0034640Uncharacterized protein. (899 aa)
BN2166_0035760Protein kinase domain-containing protein. (345 aa)
BN2166_0035770FGENESH: predicted gene_6.499 protein. (94 aa)
BN2166_0055130BY PROTMAP: gi|342320165|gb|EGU12107.1| Protein kinase Ukc1p [Rhodotorula glutinis ATCC 204091]. (540 aa)
BN2166_0066550FGENESH: predicted gene_14.205 protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1715 aa)
BN2166_0057010annotation not available (308 aa)
BN2166_0073830LIM domain-containing protein. (1248 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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