STRINGSTRING
BN2166_0021970 BN2166_0021970 BN2166_0020970 BN2166_0020970 BN2166_0004800 BN2166_0004800 BN2166_0005850 BN2166_0005850 BN2166_0009650 BN2166_0009650 BN2166_0009950 BN2166_0009950 BN2166_0012650 BN2166_0012650 BN2166_0002680 BN2166_0002680 BN2166_0004930 BN2166_0004930 BN2166_0003210 BN2166_0003210 BN2166_0007090 BN2166_0007090 BN2166_0008490 BN2166_0008490 BN2166_0010830 BN2166_0010830 BN2166_0014390 BN2166_0014390 BN2166_0014890 BN2166_0014890 BN2166_0014230 BN2166_0014230 BN2166_0025850 BN2166_0025850 BN2166_0015930 BN2166_0015930 BN2166_0016930 BN2166_0016930 SPB1 SPB1 BN2166_0004370 BN2166_0004370 BN2166_0030500 BN2166_0030500 BN2166_0019530 BN2166_0019530 BN2166_0005420 BN2166_0005420 BN2166_0005620 BN2166_0005620 BN2166_0024040 BN2166_0024040 BN2166_0033150 BN2166_0033150 BN2166_0007770 BN2166_0007770 BN2166_0008020 BN2166_0008020 BN2166_0034700 BN2166_0034700 BN2166_0027090 BN2166_0027090 BN2166_0010620 BN2166_0010620 BN2166_0036550 BN2166_0036550 BN2166_0025360 BN2166_0025360 BN2166_0025760 BN2166_0025760 BN2166_0026280 BN2166_0026280 BN2166_0033040 BN2166_0033040 BN2166_0029930 BN2166_0029930 BN2166_0030530 BN2166_0030530 BN2166_0030010 BN2166_0030010 BN2166_0034390 BN2166_0034390 BN2166_0030260 BN2166_0030260 BN2166_0017370 BN2166_0017370 BN2166_0032780 BN2166_0032780 BN2166_0036640 BN2166_0036640 BN2166_0034380 BN2166_0034380 BN2166_0034360 BN2166_0034360 BN2166_0023870 BN2166_0023870 BN2166_0026170 BN2166_0026170 BN2166_0041480 BN2166_0041480 BN2166_0027870 BN2166_0027870 BN2166_0052350 BN2166_0052350 BN2166_0029320 BN2166_0029320 BN2166_0047690 BN2166_0047690 BN2166_0033370 BN2166_0033370 BN2166_0051040 BN2166_0051040 BN2166_0034920 BN2166_0034920 BN2166_0060100 BN2166_0060100 BN2166_0036120 BN2166_0036120 BN2166_0058490 BN2166_0058490 BN2166_0056830 BN2166_0056830 BN2166_0057480 BN2166_0057480 BN2166_0057110 BN2166_0057110 BN2166_0059960 BN2166_0059960 BN2166_0048370 BN2166_0048370 BN2166_0067590 BN2166_0067590 BN2166_0063910 BN2166_0063910 BN2166_0069380 BN2166_0069380 BN2166_0069880 BN2166_0069880 BN2166_0070930 BN2166_0070930 BN2166_0071310 BN2166_0071310 BN2166_0073060 BN2166_0073060 BN2166_0061520 BN2166_0061520 BN2166_0068570 BN2166_0068570
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0021970annotation not available (319 aa)
BN2166_002097040S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (258 aa)
BN2166_0004800annotation not available (416 aa)
BN2166_0005850RNA helicase. (697 aa)
BN2166_0009650FGENESH: predicted gene_2.134 protein. (672 aa)
BN2166_0009950Nrap protein-domain containing protein. (1308 aa)
BN2166_0012650annotation not available (944 aa)
BN2166_0002680annotation not available (319 aa)
BN2166_0004930Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (173 aa)
BN2166_0003210RNA helicase. (822 aa)
BN2166_0007090Nucleolar complex-associated protein 3. (1012 aa)
BN2166_0008490ATP-dependent RNA helicase DBP10. (1021 aa)
BN2166_0010830annotation not available (347 aa)
BN2166_0014390CBF domain-containing protein. (972 aa)
BN2166_0014890BY PROTMAP: gi|647401307|emb|CDR47456.1| RHTO0S14e03884g1_1 [Rhodosporidium toruloides]. (882 aa)
BN2166_0014230FGENESH: predicted gene_2.592 protein. (502 aa)
BN2166_0025850BY PROTMAP: gi|814539488|emb|CEQ43147.1| SPOSA6832_05049, partial [Sporidiobolus salmonicolor]. (1045 aa)
BN2166_0015930Armadillo-type fold. (807 aa)
BN2166_0016930Rrp15p-domain containing protein. (301 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (946 aa)
BN2166_0004370annotation not available (554 aa)
BN2166_0030500BY PROTMAP: gi|342321069|gb|EGU13007.1| Cytoplasmic protein [Rhodotorula glutinis ATCC 204091]. (643 aa)
BN2166_0019530Uncharacterized protein. (180 aa)
BN2166_0005420KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (394 aa)
BN2166_0005620P-loop containing nucleoside triphosphate hydrolase protein. (841 aa)
BN2166_0024040Ribosome biogenesis protein Nop16. (313 aa)
BN2166_0033150ATP-dependent RNA helicase DBP3; Belongs to the DEAD box helicase family. (623 aa)
BN2166_0007770Apoptosis-antagonizing transcription factor, C-terminal-domain containing protein. (519 aa)
BN2166_0008020FGENESH: predicted gene_1.802 protein. (160 aa)
BN2166_0034700BY PROTMAP: gi|814543081|emb|CEQ39458.1| SPOSA6832_00967 [Sporidiobolus salmonicolor]. (613 aa)
BN2166_0027090U3 small nucleolar ribonucleo protein IMP3. (227 aa)
BN2166_0010620Ribosome biogenesis protein Noc4. (647 aa)
BN2166_0036550FGENESH: predicted gene_7.40 protein. (298 aa)
BN2166_0025360Uncharacterized protein. (197 aa)
BN2166_002576020S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (504 aa)
BN2166_0026280annotation not available (1341 aa)
BN2166_0033040annotation not available (660 aa)
BN2166_0029930U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (719 aa)
BN2166_0030530FGENESH: predicted gene_5.598 protein. (844 aa)
BN2166_0030010annotation not available (1507 aa)
BN2166_0034390annotation not available (1563 aa)
BN2166_0030260annotation not available (284 aa)
BN2166_0017370annotation not available (338 aa)
BN2166_0032780BY PROTMAP: gi|472585216|gb|EMS22782.1| rRNA processing protein [Rhodosporidium toruloides NP11]. (309 aa)
BN2166_0036640U3-containing 90S pre-ribosomal complex subunit-domain containing protein. (320 aa)
BN2166_0034380annotation not available (779 aa)
BN2166_0034360annotation not available (532 aa)
BN2166_0023870Uncharacterized protein. (429 aa)
BN2166_0026170annotation not available (871 aa)
BN2166_0041480Nucleolar protein,Nop52-domain containing protein. (375 aa)
BN2166_0027870annotation not available (341 aa)
BN2166_0052350Uncharacterized protein. (690 aa)
BN2166_0029320RRM domain-containing protein. (339 aa)
BN2166_0047690Bystin-domain containing protein. (438 aa)
BN2166_0033370annotation not available (2125 aa)
BN2166_0051040annotation not available (313 aa)
BN2166_0034920Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (387 aa)
BN2166_0060100FGENESH: predicted gene_12.170 protein. (154 aa)
BN2166_0036120Putative WD-repeat protein. (1012 aa)
BN2166_0058490annotation not available (1957 aa)
BN2166_0056830annotation not available (787 aa)
BN2166_0057480FGENESH: predicted gene_11.244 protein. (891 aa)
BN2166_0057110Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (439 aa)
BN2166_0059960Fcf1-domain containing protein. (177 aa)
BN2166_0048370DRIM domain-containing protein. (2568 aa)
BN2166_0067590ATP-dependent RNA helicase ROK1; Belongs to the DEAD box helicase family. (650 aa)
BN2166_0063910annotation not available (1021 aa)
BN2166_0069380RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1103 aa)
BN2166_0069880WD_REPEATS_REGION domain-containing protein. (567 aa)
BN2166_0070930Putative WD repeat protein. (907 aa)
BN2166_0071310Protein MAK16; Belongs to the MAK16 family. (337 aa)
BN2166_0073060RNA helicase. (656 aa)
BN2166_006152060S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (167 aa)
BN2166_0068570Sas10 domain-containing protein. (785 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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