(19 nodes) Small-subunit processome network (Rhodotorula toruloides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0034700	BY PROTMAP: gi\|814543081\|emb\|CEQ39458.1\| SPOSA6832_00967 [Sporidiobolus salmonicolor]. (613 aa)
	BN2166_0020970	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (258 aa)
	BN2166_0002680	annotation not available (319 aa)
	BN2166_0003210	RNA helicase. (822 aa)
	BN2166_0005420	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (394 aa)
	BN2166_0007770	Apoptosis-antagonizing transcription factor, C-terminal-domain containing protein. (519 aa)
	BN2166_0068570	Sas10 domain-containing protein. (785 aa)
	BN2166_0069880	WD_REPEATS_REGION domain-containing protein. (567 aa)
	BN2166_0048370	DRIM domain-containing protein. (2568 aa)
	BN2166_0059960	Fcf1-domain containing protein. (177 aa)
	BN2166_0027870	annotation not available (341 aa)
	BN2166_0026170	annotation not available (871 aa)
	BN2166_0034360	annotation not available (532 aa)
	BN2166_0032780	BY PROTMAP: gi\|472585216\|gb\|EMS22782.1\| rRNA processing protein [Rhodosporidium toruloides NP11]. (309 aa)
	BN2166_0034390	annotation not available (1563 aa)
	BN2166_0030010	annotation not available (1507 aa)
	BN2166_0030530	FGENESH: predicted gene_5.598 protein. (844 aa)
	BN2166_0029930	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (719 aa)
	BN2166_0026280	annotation not available (1341 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0002680	BN2166_0003210	A0A0K3C6Y2	A0A0K3C7L1	annotation not available	RNA helicase.	0.605
BN2166_0002680	BN2166_0005420	A0A0K3C6Y2	A0A0K3CC05	annotation not available	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.980
BN2166_0002680	BN2166_0007770	A0A0K3C6Y2	A0A0K3CCM1	annotation not available	Apoptosis-antagonizing transcription factor, C-terminal-domain containing protein.	0.934
BN2166_0002680	BN2166_0020970	A0A0K3C6Y2	A0A061AXW8	annotation not available	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.660
BN2166_0002680	BN2166_0026170	A0A0K3C6Y2	A0A0K3CHR6	annotation not available	annotation not available	0.967
BN2166_0002680	BN2166_0026280	A0A0K3C6Y2	A0A0K3CDU6	annotation not available	annotation not available	0.860
BN2166_0002680	BN2166_0027870	A0A0K3C6Y2	A0A0K3CI84	annotation not available	annotation not available	0.979
BN2166_0002680	BN2166_0029930	A0A0K3C6Y2	A0A0K3CEY5	annotation not available	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.787
BN2166_0002680	BN2166_0030010	A0A0K3C6Y2	A0A0K3CF35	annotation not available	annotation not available	0.958
BN2166_0002680	BN2166_0030530	A0A0K3C6Y2	A0A0K3CF33	annotation not available	FGENESH: predicted gene_5.598 protein.	0.958
BN2166_0002680	BN2166_0032780	A0A0K3C6Y2	A0A0K3CFS1	annotation not available	BY PROTMAP: gi\|472585216\|gb\|EMS22782.1\| rRNA processing protein [Rhodosporidium toruloides NP11].	0.769
BN2166_0002680	BN2166_0034360	A0A0K3C6Y2	A0A0K3CGC4	annotation not available	annotation not available	0.965
BN2166_0002680	BN2166_0034390	A0A0K3C6Y2	A0A0K3CF46	annotation not available	annotation not available	0.975
BN2166_0002680	BN2166_0034700	A0A0K3C6Y2	A0A0K3CCY6	annotation not available	BY PROTMAP: gi\|814543081\|emb\|CEQ39458.1\| SPOSA6832_00967 [Sporidiobolus salmonicolor].	0.973
BN2166_0002680	BN2166_0048370	A0A0K3C6Y2	A0A0K3CP64	annotation not available	DRIM domain-containing protein.	0.965
BN2166_0002680	BN2166_0068570	A0A0K3C6Y2	A0A0K3CUN7	annotation not available	Sas10 domain-containing protein.	0.979
BN2166_0002680	BN2166_0069880	A0A0K3C6Y2	A0A0K3CQZ4	annotation not available	WD_REPEATS_REGION domain-containing protein.	0.969
BN2166_0003210	BN2166_0002680	A0A0K3C7L1	A0A0K3C6Y2	RNA helicase.	annotation not available	0.605
BN2166_0003210	BN2166_0005420	A0A0K3C7L1	A0A0K3CC05	RNA helicase.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.905
BN2166_0003210	BN2166_0007770	A0A0K3C7L1	A0A0K3CCM1	RNA helicase.	Apoptosis-antagonizing transcription factor, C-terminal-domain containing protein.	0.939

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