STRINGSTRING
BN2166_0040900 BN2166_0040900 BN2166_0027730 BN2166_0027730 BN2166_0027110 BN2166_0027110 BN2166_0027060 BN2166_0027060 BN2166_0031300 BN2166_0031300 BN2166_0004420 BN2166_0004420 BN2166_0015210 BN2166_0015210 BN2166_0009780 BN2166_0009780 BN2166_0008380 BN2166_0008380 BN2166_0005410 BN2166_0005410 BN2166_0017400 BN2166_0017400 BN2166_0004260 BN2166_0004260 BN2166_0007790 BN2166_0007790 BN2166_0015550 BN2166_0015550 BN2166_0052320 BN2166_0052320 BN2166_0069280 BN2166_0069280 BN2166_0055020 BN2166_0055020 BN2166_0070310 BN2166_0070310 BN2166_0061590 BN2166_0061590 BN2166_0060030 BN2166_0060030 BN2166_0069840 BN2166_0069840 BN2166_0060370 BN2166_0060370 BN2166_0058590 BN2166_0058590 BN2166_0052210 BN2166_0052210 BN2166_0050960 BN2166_0050960 BN2166_0051630 BN2166_0051630 BN2166_0050480 BN2166_0050480 BN2166_0049680 BN2166_0049680 BN2166_0049430 BN2166_0049430 BN2166_0058800 BN2166_0058800 BN2166_0044710 BN2166_0044710 BN2166_0047990 BN2166_0047990 BN2166_0046090 BN2166_0046090 BN2166_0028420 BN2166_0028420 BN2166_0043140 BN2166_0043140 BN2166_0035810 BN2166_0035810 BN2166_0032630 BN2166_0032630 BN2166_0031010 BN2166_0031010 BN2166_0029630 BN2166_0029630
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0040900Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (1342 aa)
BN2166_0027730Putative DNA helicase INO80. (1591 aa)
BN2166_0027110Uncharacterized protein. (463 aa)
BN2166_0027060Uncharacterized protein. (479 aa)
BN2166_0031300Belongs to the actin family. (794 aa)
BN2166_0004420RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (467 aa)
BN2166_0015210FGENESH: predicted gene_2.690 protein. (782 aa)
BN2166_0009780BY PROTMAP: gi|342319889|gb|EGU11834.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (274 aa)
BN2166_0008380Putative DNA polymerase. (210 aa)
BN2166_0005410FGENESH: predicted gene_1.541 protein. (1044 aa)
BN2166_0017400FGENESH: predicted gene_3.191 protein. (1046 aa)
BN2166_0004260annotation not available (783 aa)
BN2166_0007790Belongs to the actin family. (533 aa)
BN2166_0015550Uncharacterized protein. (514 aa)
BN2166_0052320FGENESH: predicted gene_10.69 protein. (535 aa)
BN2166_0069280HIT-type domain-containing protein. (191 aa)
BN2166_0055020FGENESH: predicted gene_10.339 protein; Belongs to the actin family. (580 aa)
BN2166_0070310annotation not available (1136 aa)
BN2166_0061590BY PROTMAP: gi|472586134|gb|EMS23662.1| nucleus protein [Rhodosporidium toruloides NP11]. (198 aa)
BN2166_0060030FGENESH: predicted gene_12.163 protein. (507 aa)
BN2166_0069840BY PROTMAP: gi|647403688|emb|CDR49772.1| RHTO0S32e00540g1_1 [Rhodosporidium toruloides]. (515 aa)
BN2166_0060370Uncharacterized protein; Belongs to the actin family. (948 aa)
BN2166_0058590BY PROTMAP: gi|647398513|emb|CDR42529.1| RHTO0S07e00518g1_1 [Rhodosporidium toruloides]. (562 aa)
BN2166_0052210annotation not available (547 aa)
BN2166_0050960BY PROTMAP: gi|342321257|gb|EGU13191.1| YEATS family protein [Rhodotorula glutinis ATCC 204091]. (276 aa)
BN2166_0051630annotation not available (971 aa)
BN2166_0050480annotation not available (1056 aa)
BN2166_0049680annotation not available (493 aa)
BN2166_0049430SNF5 / SMARCB1 / INI1-domain containing protein. (924 aa)
BN2166_0058800YL1 nuclear protein-domain containing protein. (642 aa)
BN2166_0044710BY PROTMAP: gi|342321520|gb|EGU13453.1| Helicase SWR1 [Rhodotorula glutinis ATCC 204091]. (1703 aa)
BN2166_0047990annotation not available (1095 aa)
BN2166_0046090Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (798 aa)
BN2166_0028420FGENESH: predicted gene_5.387 protein. (743 aa)
BN2166_0043140annotation not available (712 aa)
BN2166_0035810BY PROTMAP: gi|342319767|gb|EGU11714.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (907 aa)
BN2166_0032630BY PROTMAP: gi|342319639|gb|EGU11586.1| Smarcc1 protein [Rhodotorula glutinis ATCC 204091]. (643 aa)
BN2166_0031010SNF2 family N-terminal domain-domain containing protein. (1329 aa)
BN2166_0029630annotation not available (1156 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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