29 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0070800	Tubulin-folding cofactor B. (252 aa)
	BN2166_0008900	XPC-binding domain-domain containing protein. (403 aa)
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0001330	annotation not available (453 aa)
	BN2166_0003080	BY PROTMAP: gi\|342319372\|gb\|EGU11321.1\| Pre-mRNA splicing factor [Rhodotorula glutinis ATCC 204091]. (728 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0022850	FGENESH: predicted gene_4.61 protein. (409 aa)
	BN2166_0017590	FGENESH: predicted gene_3.210 protein. (1424 aa)
	BN2166_0022840	Ubiquitin-like domain-containing protein. (420 aa)
	BN2166_0022990	FGENESH: predicted gene_4.75 protein. (760 aa)
	BN2166_0020310	FGENESH: predicted gene_3.482 protein. (187 aa)
	BN2166_0022860	BY PROTMAP: gi\|647402238\|emb\|CDR48520.1\| RHTO0S18e01860g1_1 [Rhodosporidium toruloides]. (429 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0046200	annotation not available (310 aa)
	BN2166_0038160	BY PROTMAP: gi\|647398779\|emb\|CDR43013.1\| RHTO0S07e06546g1_1 [Rhodosporidium toruloides]; Belongs to the peptidase C19 family. (1279 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0049480	FGENESH: predicted gene_9.294 protein. (72 aa)
	BN2166_0052490	Small ubiquitin-related modifier. (102 aa)
	BN2166_0049260	BY PROTMAP: gi\|647396700\|emb\|CDR39139.1\| RHTO0S04e02146g1_1 [Rhodosporidium toruloides]. (398 aa)
	BN2166_0051480	FGENESH: predicted gene_9.494 protein. (127 aa)
	BN2166_0055540	annotation not available (758 aa)
	BN2166_0038170	annotation not available (347 aa)
	BN2166_0054830	annotation not available (221 aa)
	BN2166_0043420	annotation not available (374 aa)
	BN2166_0063180	Ubiquitin carboxyl-terminal hydrolase. (533 aa)
	BN2166_0067830	FGENESH: predicted gene_15.64 protein. (72 aa)
	BN2166_0074330	Ubiquitin-like domain-containing protein. (273 aa)
	BN2166_0064220	annotation not available (126 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0001330	BN2166_0003390	A0A0K3C6L5	A0A0K3C6J0	annotation not available	annotation not available	0.904
BN2166_0001330	BN2166_0005040	A0A0K3C6L5	A0A0K3C739	annotation not available	Uncharacterized protein.	0.801
BN2166_0001330	BN2166_0008900	A0A0K3C6L5	A0A0K3C5Q2	annotation not available	XPC-binding domain-domain containing protein.	0.927
BN2166_0001330	BN2166_0017590	A0A0K3C6L5	A0A0K3CAK2	annotation not available	FGENESH: predicted gene_3.210 protein.	0.587
BN2166_0001330	BN2166_0018570	A0A0K3C6L5	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.830
BN2166_0001330	BN2166_0022840	A0A0K3C6L5	A0A0K3CC13	annotation not available	Ubiquitin-like domain-containing protein.	0.587
BN2166_0001330	BN2166_0022860	A0A0K3C6L5	A0A0K3CCZ8	annotation not available	BY PROTMAP: gi\|647402238\|emb\|CDR48520.1\| RHTO0S18e01860g1_1 [Rhodosporidium toruloides].	0.587
BN2166_0001330	BN2166_0022990	A0A0K3C6L5	A0A0K3CC20	annotation not available	FGENESH: predicted gene_4.75 protein.	0.587
BN2166_0001330	BN2166_0029020	A0A0K3C6L5	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.830
BN2166_0001330	BN2166_0042310	A0A0K3C6L5	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.830
BN2166_0001330	BN2166_0043420	A0A0K3C6L5	A0A0K3CMT3	annotation not available	annotation not available	0.726
BN2166_0001330	BN2166_0064220	A0A0K3C6L5	A0A0K3CTK7	annotation not available	annotation not available	0.706
BN2166_0001330	BN2166_0067830	A0A0K3C6L5	A0A0K3CQF4	annotation not available	FGENESH: predicted gene_15.64 protein.	0.457
BN2166_0001330	BN2166_0074330	A0A0K3C6L5	A0A0K3CS56	annotation not available	Ubiquitin-like domain-containing protein.	0.587
BN2166_0003080	BN2166_0049480	A0A0K3C713	A0A0K3CK71	BY PROTMAP: gi\|342319372\|gb\|EGU11321.1\| Pre-mRNA splicing factor [Rhodotorula glutinis ATCC 204091].	FGENESH: predicted gene_9.294 protein.	0.606
BN2166_0003390	BN2166_0001330	A0A0K3C6J0	A0A0K3C6L5	annotation not available	annotation not available	0.904
BN2166_0003390	BN2166_0008900	A0A0K3C6J0	A0A0K3C5Q2	annotation not available	XPC-binding domain-domain containing protein.	0.949
BN2166_0003390	BN2166_0017590	A0A0K3C6J0	A0A0K3CAK2	annotation not available	FGENESH: predicted gene_3.210 protein.	0.993
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0022840	A0A0K3C6J0	A0A0K3CC13	annotation not available	Ubiquitin-like domain-containing protein.	0.781

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