STRINGSTRING
BN2166_0066300 BN2166_0066300 BN2166_0047260 BN2166_0047260 BN2166_0047650 BN2166_0047650 BN2166_0024380 BN2166_0024380 BN2166_0024390 BN2166_0024390 BN2166_0070030 BN2166_0070030 BN2166_0020680 BN2166_0020680 BN2166_0017610 BN2166_0017610
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0066300annotation not available (1334 aa)
BN2166_0047260FGENESH: predicted gene_9.72 protein. (1762 aa)
BN2166_0047650BY PROTMAP: gi|342319968|gb|EGU11913.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (257 aa)
BN2166_0024380FGENESH: predicted gene_4.214 protein. (2249 aa)
BN2166_0024390FGENESH: predicted gene_4.215 protein. (2233 aa)
BN2166_0070030annotation not available (1384 aa)
BN2166_0020680FGENESH: predicted gene_3.519 protein. (1459 aa)
BN2166_0017610FGENESH: predicted gene_3.212 protein. (1777 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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