(44 nodes) Pyridoxal phosphate-dependent transferase network (Rhodotorula toruloides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	BN2166_0035890	Ornithine aminotransferase. (485 aa)
	BN2166_0042750	Pyridoxal phosphate-dependent transferase. (602 aa)
	BN2166_0015570	Pyridoxal phosphate-dependent transferase. (444 aa)
	BN2166_0038950	annotation not available (420 aa)
	BN2166_0034550	Pyridoxal phosphate-dependent transferase. (528 aa)
	BN2166_0026090	Pyridoxal phosphate-dependent transferase. (408 aa)
	BN2166_0029250	Aspartate aminotransferase. (425 aa)
	BN2166_0043800	Molybdenum cofactor sulfurase. (906 aa)
	BN2166_0034260	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (499 aa)
	BN2166_0024370	BY PROTMAP: gi\|647403312\|emb\|CDR49454.1\| RHTO0S26e02124g1_1 [Rhodosporidium toruloides]. (524 aa)
	BN2166_0043340	BY PROTMAP: gi\|647396089\|emb\|CDR38111.1\| RHTO0S03e03774g1_1 [Rhodosporidium toruloides]; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (509 aa)
	BN2166_0044690	FGENESH: predicted gene_8.324 protein. (447 aa)
	BN2166_0045690	FGENESH: predicted gene_8.424 protein. (433 aa)
	BN2166_0050540	BY PROTMAP: gi\|647403143\|emb\|CDR49301.1\| RHTO0S25e00782g2_1 [Rhodosporidium toruloides]. (309 aa)
	BN2166_0049630	O-acetylhomoserine ami. (435 aa)
	BN2166_0052740	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (559 aa)
	BN2166_0004000	FGENESH: predicted gene_1.400 protein. (401 aa)
	BN2166_0007650	Pyridoxal phosphate-dependent transferase. (428 aa)
	BN2166_0002190	Pyridoxal phosphate-dependent transferase. (472 aa)
	BN2166_0002480	BY PROTMAP: gi\|647396872\|emb\|CDR39519.1\| RHTO0S04e05974g1_1 [Rhodosporidium toruloides]. (358 aa)
	BN2166_0003430	BY PROTMAP: gi\|342319389\|gb\|EGU11338.1\| Cystathionine beta-lyase [Rhodotorula glutinis ATCC 204091]. (2165 aa)
	BN2166_0001510	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11]. (462 aa)
	BN2166_0003160	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family. (531 aa)
	BN2166_0005030	Aspartate aminotransferase. (451 aa)
	BN2166_0008480	FGENESH: predicted gene_2.17 protein. (539 aa)
	BN2166_0023750	Pyridoxal phosphate-dependent transferase. (563 aa)
	BN2166_0012710	Pyridoxal phosphate-dependent transferase. (441 aa)
	BN2166_0015530	Pyridoxal phosphate-dependent transferase. (852 aa)
	BN2166_0019690	Pyridoxal phosphate-dependent transferase. (403 aa)
	BN2166_0002720	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (646 aa)
	BN2166_0054840	Glycine hydroxymethyltransferase. (471 aa)
	BN2166_0052730	FGENESH: predicted gene_10.110 protein. (423 aa)
	BN2166_0052660	Serine palmitoyltransferase 2. (747 aa)
	BN2166_0058690	BY PROTMAP: gi\|814542705\|emb\|CEQ39736.1\| SPOSA6832_01283 [Sporidiobolus salmonicolor]. (448 aa)
	BN2166_0054560	annotation not available (531 aa)
	BN2166_0059640	annotation not available (1052 aa)
	BN2166_0059180	BY PROTMAP: gi\|647397525\|emb\|CDR40601.1\| RHTO0S05e05358g1_1 [Rhodosporidium toruloides]. (473 aa)
	BN2166_0060480	Serine C-palmitoyltransferase. (614 aa)
	BN2166_0064180	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (486 aa)
	BN2166_0067790	Pyridoxal phosphate-dependent transferase. (655 aa)
	BN2166_0050670	BY PROTMAP: gi\|647403126\|emb\|CDR49284.1\| RHTO0S25e00430g1_1 [Rhodosporidium toruloides]. (407 aa)
	BN2166_0066130	Pyridoxal phosphate-dependent transferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (442 aa)
	BN2166_0070790	Putative cystathionine gamma-synthase. (774 aa)
	BN2166_0053320	BY PROTMAP: gi\|472584245\|gb\|EMS21851.1\| cystathionine gamma-lyase [Rhodosporidium toruloides NP11]. (458 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0001510	BN2166_0003160	A0A0K3C775	A0A0K3C7K7	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	0.940
BN2166_0001510	BN2166_0003430	A0A0K3C775	A0A0K3C736	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	BY PROTMAP: gi\|342319389\|gb\|EGU11338.1\| Cystathionine beta-lyase [Rhodotorula glutinis ATCC 204091].	0.733
BN2166_0001510	BN2166_0004000	A0A0K3C775	A0A0K3C4I8	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	FGENESH: predicted gene_1.400 protein.	0.592
BN2166_0001510	BN2166_0005030	A0A0K3C775	A0A0K3C7K8	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	Aspartate aminotransferase.	0.830
BN2166_0001510	BN2166_0012710	A0A0K3C775	A0A0K3CA58	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	Pyridoxal phosphate-dependent transferase.	0.669
BN2166_0001510	BN2166_0019690	A0A0K3C775	A0A0K3CB42	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	Pyridoxal phosphate-dependent transferase.	0.627
BN2166_0001510	BN2166_0024370	A0A0K3C775	A0A0K3CHA4	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	BY PROTMAP: gi\|647403312\|emb\|CDR49454.1\| RHTO0S26e02124g1_1 [Rhodosporidium toruloides].	0.462
BN2166_0001510	BN2166_0029250	A0A0K3C775	A0A0K3CBD2	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	Aspartate aminotransferase.	0.879
BN2166_0001510	BN2166_0034550	A0A0K3C775	A0A0K3CCW5	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	Pyridoxal phosphate-dependent transferase.	0.669
BN2166_0001510	BN2166_0042750	A0A0K3C775	A0A0K3CFD0	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	Pyridoxal phosphate-dependent transferase.	0.669
BN2166_0001510	BN2166_0043340	A0A0K3C775	A0A0K3CHQ2	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	BY PROTMAP: gi\|647396089\|emb\|CDR38111.1\| RHTO0S03e03774g1_1 [Rhodosporidium toruloides]; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.413
BN2166_0001510	BN2166_0043800	A0A0K3C775	A0A0K3CFM3	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	Molybdenum cofactor sulfurase.	0.407
BN2166_0001510	BN2166_0044690	A0A0K3C775	A0A0K3CI12	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	FGENESH: predicted gene_8.324 protein.	0.594
BN2166_0001510	BN2166_0049630	A0A0K3C775	A0A0K3CK82	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	O-acetylhomoserine ami.	0.757
BN2166_0001510	BN2166_0050540	A0A0K3C775	A0A0K3CJT7	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	BY PROTMAP: gi\|647403143\|emb\|CDR49301.1\| RHTO0S25e00782g2_1 [Rhodosporidium toruloides].	0.404
BN2166_0001510	BN2166_0050670	A0A0K3C775	A0A0K3CPU4	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	BY PROTMAP: gi\|647403126\|emb\|CDR49284.1\| RHTO0S25e00430g1_1 [Rhodosporidium toruloides].	0.404
BN2166_0001510	BN2166_0053320	A0A0K3C775	A0A0K3CQJ9	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	BY PROTMAP: gi\|472584245\|gb\|EMS21851.1\| cystathionine gamma-lyase [Rhodosporidium toruloides NP11].	0.733
BN2166_0001510	BN2166_0054560	A0A0K3C775	A0A0K3CM97	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	annotation not available	0.647
BN2166_0001510	BN2166_0054840	A0A0K3C775	A0A0K3CKY5	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	Glycine hydroxymethyltransferase.	0.480
BN2166_0001510	BN2166_0059640	A0A0K3C775	A0A0K3CMA3	BY PROTMAP: gi\|472586077\|gb\|EMS23619.1\| aspartate aminotransferase [Rhodosporidium toruloides NP11].	annotation not available	0.466

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