STRINGSTRING
BN2166_0018080 BN2166_0018080 BN2166_0073070 BN2166_0073070 BN2166_0064520 BN2166_0064520 BN2166_0074780 BN2166_0074780 BN2166_0075140 BN2166_0075140 BN2166_0074890 BN2166_0074890 BN2166_0067660 BN2166_0067660 BN2166_0067780 BN2166_0067780 BN2166_0075350 BN2166_0075350 BN2166_0074850 BN2166_0074850 BN2166_0060380 BN2166_0060380 BN2166_0059430 BN2166_0059430 BN2166_0056610 BN2166_0056610 BN2166_0020990 BN2166_0020990 BN2166_0029700 BN2166_0029700 BN2166_0018210 BN2166_0018210 BN2166_0004420 BN2166_0004420 BN2166_0018610 BN2166_0018610 BN2166_0022240 BN2166_0022240 BN2166_0019260 BN2166_0019260 BN2166_0006820 BN2166_0006820 BN2166_0039050 BN2166_0039050 BN2166_0042000 BN2166_0042000 BN2166_0040180 BN2166_0040180 BN2166_0044680 BN2166_0044680 BN2166_0044910 BN2166_0044910 BN2166_0055910 BN2166_0055910 BN2166_0043470 BN2166_0043470 BN2166_0009970 BN2166_0009970 PIF1 PIF1 BN2166_0008260 BN2166_0008260 BN2166_0016890 BN2166_0016890
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0018080Histone H2B; Belongs to the histone H2B family. (138 aa)
BN2166_0073070Uncharacterized protein. (2352 aa)
BN2166_0064520BY PROTMAP: gi|472585507|gb|EMS23058.1| bloom syndrome protein [Rhodosporidium toruloides NP11]. (1529 aa)
BN2166_0074780FGENESH: predicted gene_20.1 protein. (596 aa)
BN2166_0075140FGENESH: predicted gene_25.4 protein. (590 aa)
BN2166_0074890FGENESH: predicted gene_21.4 protein. (585 aa)
BN2166_0067660annotation not available (813 aa)
BN2166_0067780FGENESH: predicted gene_15.59 protein. (540 aa)
BN2166_0075350FGENESH: predicted gene_29.4 protein. (581 aa)
BN2166_0074850FGENESH: predicted gene_20.8 protein. (406 aa)
BN2166_0060380BY PROTMAP: gi|472586258|gb|EMS23786.1| 3'-5' exonuclease [Rhodosporidium toruloides NP11]. (335 aa)
BN2166_0059430annotation not available (762 aa)
BN2166_0056610annotation not available (1114 aa)
BN2166_0020990Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1154 aa)
BN2166_0029700BY PROTMAP: gi|647399254|emb|CDR43820.1| RHTO0S08e06326g1_1 [Rhodosporidium toruloides]. (596 aa)
BN2166_0018210Histone H2B; Belongs to the histone H2B family. (125 aa)
BN2166_0004420RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (467 aa)
BN2166_0018610annotation not available (709 aa)
BN2166_0022240FGENESH: predicted gene_3.675 protein. (157 aa)
BN2166_0019260ATP-dependent DNA helicase; Belongs to the helicase family. (867 aa)
BN2166_0006820Putative guanyl nucleotide binding protein. (393 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0042000H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (170 aa)
BN2166_0040180BY PROTMAP: gi|647401561|emb|CDR47884.1| RHTO0S15e03246g1_1 [Rhodosporidium toruloides]. (490 aa)
BN2166_0044680BY PROTMAP: gi|647395342|emb|CDR36677.1| RHTO0S02e05380g1_1 [Rhodosporidium toruloides]. (936 aa)
BN2166_0044910Putative pseudouridylate synthase 4. (403 aa)
BN2166_0055910annotation not available (256 aa)
BN2166_0043470FGENESH: predicted gene_8.202 protein. (99 aa)
BN2166_0009970Histone H2B; Belongs to the histone H2B family. (144 aa)
PIF1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (681 aa)
BN2166_0008260annotation not available (433 aa)
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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