9 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0019510	ANAPC5 domain-containing protein. (680 aa)
	BN2166_0024960	Uncharacterized protein. (735 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0033070	annotation not available (266 aa)
	BN2166_0070730	FGENESH: predicted gene_16.99 protein. (810 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0019510	A0A0K3C6J0	A0A0K3CC12	annotation not available	ANAPC5 domain-containing protein.	0.748
BN2166_0003390	BN2166_0024960	A0A0K3C6J0	A0A0K3CDK6	annotation not available	Uncharacterized protein.	0.882
BN2166_0003390	BN2166_0029020	A0A0K3C6J0	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.938
BN2166_0003390	BN2166_0033070	A0A0K3C6J0	A0A0K3CJT6	annotation not available	annotation not available	0.626
BN2166_0003390	BN2166_0042310	A0A0K3C6J0	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.937
BN2166_0003390	BN2166_0070730	A0A0K3C6J0	A0A0K3CR82	annotation not available	FGENESH: predicted gene_16.99 protein.	0.859
BN2166_0005040	BN2166_0018570	A0A0K3C739	A0A0K3CFL1	Uncharacterized protein.	Uncharacterized protein.	0.773
BN2166_0005040	BN2166_0019510	A0A0K3C739	A0A0K3CC12	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.734
BN2166_0005040	BN2166_0024960	A0A0K3C739	A0A0K3CDK6	Uncharacterized protein.	Uncharacterized protein.	0.882
BN2166_0005040	BN2166_0029020	A0A0K3C739	A0A0K3CII4	Uncharacterized protein.	Ubiquitin-related domain-containing protein.	0.773
BN2166_0005040	BN2166_0033070	A0A0K3C739	A0A0K3CJT6	Uncharacterized protein.	annotation not available	0.626
BN2166_0005040	BN2166_0042310	A0A0K3C739	A0A0K3CIR4	Uncharacterized protein.	FGENESH: predicted gene_8.86 protein.	0.773
BN2166_0005040	BN2166_0070730	A0A0K3C739	A0A0K3CR82	Uncharacterized protein.	FGENESH: predicted gene_16.99 protein.	0.859
BN2166_0018570	BN2166_0003390	A0A0K3CFL1	A0A0K3C6J0	Uncharacterized protein.	annotation not available	0.982
BN2166_0018570	BN2166_0005040	A0A0K3CFL1	A0A0K3C739	Uncharacterized protein.	Uncharacterized protein.	0.773
BN2166_0018570	BN2166_0019510	A0A0K3CFL1	A0A0K3CC12	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.786
BN2166_0018570	BN2166_0024960	A0A0K3CFL1	A0A0K3CDK6	Uncharacterized protein.	Uncharacterized protein.	0.712
BN2166_0018570	BN2166_0033070	A0A0K3CFL1	A0A0K3CJT6	Uncharacterized protein.	annotation not available	0.563
BN2166_0018570	BN2166_0070730	A0A0K3CFL1	A0A0K3CR82	Uncharacterized protein.	FGENESH: predicted gene_16.99 protein.	0.713

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