STRINGSTRING
BN2166_0061600 BN2166_0061600 BN2166_0070170 BN2166_0070170 BN2166_0060290 BN2166_0060290 BN2166_0035820 BN2166_0035820 BN2166_0050280 BN2166_0050280 BN2166_0042310 BN2166_0042310 BN2166_0029020 BN2166_0029020 BN2166_0051400 BN2166_0051400 BN2166_0051250 BN2166_0051250 BN2166_0038160 BN2166_0038160 BN2166_0018570 BN2166_0018570 BN2166_0032100 BN2166_0032100 BN2166_0018210 BN2166_0018210 BN2166_0020990 BN2166_0020990 BN2166_0018080 BN2166_0018080 BN2166_0009110 BN2166_0009110 BN2166_0004930 BN2166_0004930 BN2166_0005040 BN2166_0005040 BN2166_0000260 BN2166_0000260 BN2166_0003390 BN2166_0003390 BN2166_0009970 BN2166_0009970 BN2166_0048390 BN2166_0048390 BN2166_0056380 BN2166_0056380
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0061600annotation not available (308 aa)
BN2166_0070170FGENESH: predicted gene_16.43 protein. (452 aa)
BN2166_0060290Set1 complex component ash2. (586 aa)
BN2166_0035820S-adenosyl-L-methionine-dependent methyltransferase. (355 aa)
BN2166_0050280BY PROTMAP: gi|342321286|gb|EGU13220.1| Pcc1 protein [Rhodotorula glutinis ATCC 204091]. (291 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0051400annotation not available (914 aa)
BN2166_0051250annotation not available (961 aa)
BN2166_0038160BY PROTMAP: gi|647398779|emb|CDR43013.1| RHTO0S07e06546g1_1 [Rhodosporidium toruloides]; Belongs to the peptidase C19 family. (1279 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0032100BY PROTMAP: gi|342319621|gb|EGU11568.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (494 aa)
BN2166_0018210Histone H2B; Belongs to the histone H2B family. (125 aa)
BN2166_0020990Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (1154 aa)
BN2166_0018080Histone H2B; Belongs to the histone H2B family. (138 aa)
BN2166_0009110Uncharacterized protein. (132 aa)
BN2166_0004930Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (173 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0000260RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (467 aa)
BN2166_0003390annotation not available (153 aa)
BN2166_0009970Histone H2B; Belongs to the histone H2B family. (144 aa)
BN2166_0048390FGENESH: predicted gene_9.185 protein. (101 aa)
BN2166_0056380BY PROTMAP: gi|647399608|emb|CDR44506.1| RHTO0S09e05138g1_1 [Rhodosporidium toruloides]; Belongs to the PI3/PI4-kinase family. (3720 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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