25 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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Your Input:
	BN2166_0033300	Kinetochore protein spc25. (329 aa)
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0007340	annotation not available (2763 aa)
	BN2166_0010190	ELYS domain-containing protein. (742 aa)
	BN2166_0010680	BY PROTMAP: gi\|342319928\|gb\|EGU11873.1\| Cysteine peptidase C50 [Rhodotorula glutinis ATCC 204091]. (2219 aa)
	BN2166_0014540	BY PROTMAP: gi\|647401265\|emb\|CDR47393.1\| RHTO0S14e02982g1_1 [Rhodosporidium toruloides]. (287 aa)
	BN2166_0014930	FGENESH: predicted gene_2.662 protein. (94 aa)
	BN2166_0019510	ANAPC5 domain-containing protein. (680 aa)
	BN2166_0019610	Spindle assembly checkpoint component Mad1. (802 aa)
	BN2166_0020330	HEC/Ndc80p family-domain containing protein. (739 aa)
	BN2166_0020430	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	BN2166_0008320	FGENESH: predicted gene_2.1 protein. (1085 aa)
	BN2166_0012020	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1134 aa)
	BN2166_0014670	annotation not available (652 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0038440	annotation not available (757 aa)
	BN2166_0041190	annotation not available (2526 aa)
	BN2166_0043090	Nuf2 family-domain containing protein. (449 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0050490	Nucleoporin Nup120/160-domain containing protein. (1580 aa)
	BN2166_0064040	RAD26-like SNF2 family DNA-dependent ATPase. (1445 aa)
	BN2166_0074150	BY PROTMAP: gi\|342320357\|gb\|EGU12298.1\| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (3016 aa)
	BN2166_0069410	FGENESH: predicted gene_15.222 protein. (950 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0003390	BN2166_0008320	A0A0K3C6J0	A0A0K3CCS8	annotation not available	FGENESH: predicted gene_2.1 protein.	0.528
BN2166_0003390	BN2166_0012020	A0A0K3C6J0	A0A0K3CDV6	annotation not available	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.467
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0019510	A0A0K3C6J0	A0A0K3CC12	annotation not available	ANAPC5 domain-containing protein.	0.748
BN2166_0003390	BN2166_0029020	A0A0K3C6J0	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.938
BN2166_0003390	BN2166_0042310	A0A0K3C6J0	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.937
BN2166_0003390	BN2166_0064040	A0A0K3C6J0	A0A0K3CNI8	annotation not available	RAD26-like SNF2 family DNA-dependent ATPase.	0.525
BN2166_0003390	BN2166_0069410	A0A0K3C6J0	A0A0K3CRG0	annotation not available	FGENESH: predicted gene_15.222 protein.	0.584
BN2166_0005040	BN2166_0008320	A0A0K3C739	A0A0K3CCS8	Uncharacterized protein.	FGENESH: predicted gene_2.1 protein.	0.528
BN2166_0005040	BN2166_0012020	A0A0K3C739	A0A0K3CDV6	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.467
BN2166_0005040	BN2166_0018570	A0A0K3C739	A0A0K3CFL1	Uncharacterized protein.	Uncharacterized protein.	0.773
BN2166_0005040	BN2166_0019510	A0A0K3C739	A0A0K3CC12	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.734
BN2166_0005040	BN2166_0029020	A0A0K3C739	A0A0K3CII4	Uncharacterized protein.	Ubiquitin-related domain-containing protein.	0.773
BN2166_0005040	BN2166_0042310	A0A0K3C739	A0A0K3CIR4	Uncharacterized protein.	FGENESH: predicted gene_8.86 protein.	0.773
BN2166_0005040	BN2166_0064040	A0A0K3C739	A0A0K3CNI8	Uncharacterized protein.	RAD26-like SNF2 family DNA-dependent ATPase.	0.525
BN2166_0005040	BN2166_0069410	A0A0K3C739	A0A0K3CRG0	Uncharacterized protein.	FGENESH: predicted gene_15.222 protein.	0.584
BN2166_0007340	BN2166_0010190	A0A0K3C7R5	A0A0K3C8G7	annotation not available	ELYS domain-containing protein.	0.988
BN2166_0007340	BN2166_0010680	A0A0K3C7R5	A0A0K3C988	annotation not available	BY PROTMAP: gi\|342319928\|gb\|EGU11873.1\| Cysteine peptidase C50 [Rhodotorula glutinis ATCC 204091].	0.629
BN2166_0007340	BN2166_0050490	A0A0K3C7R5	A0A0K3CJT4	annotation not available	Nucleoporin Nup120/160-domain containing protein.	0.997
BN2166_0007340	BN2166_0074150	A0A0K3C7R5	A0A0K3CPJ8	annotation not available	BY PROTMAP: gi\|342320357\|gb\|EGU12298.1\| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].	0.645

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