STRINGSTRING
BN2166_0015520 BN2166_0015520 BN2166_0009970 BN2166_0009970 BN2166_0004910 BN2166_0004910 BN2166_0011560 BN2166_0011560 BN2166_0015580 BN2166_0015580 BN2166_0018080 BN2166_0018080 BN2166_0018210 BN2166_0018210 BN2166_0031440 BN2166_0031440 BN2166_0034040 BN2166_0034040 BN2166_0016820 BN2166_0016820 BN2166_0019520 BN2166_0019520 BN2166_0035960 BN2166_0035960 BN2166_0031270 BN2166_0031270 BN2166_0051160 BN2166_0051160 BN2166_0065340 BN2166_0065340 BN2166_0066340 BN2166_0066340 BN2166_0061460 BN2166_0061460
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0015520RHTO0S11e00144g1_1. (109 aa)
BN2166_0009970Histone H2B; Belongs to the histone H2B family. (144 aa)
BN2166_0004910Thioredoxin; Belongs to the thioredoxin family. (108 aa)
BN2166_0011560annotation not available (1570 aa)
BN2166_0015580Thioredoxin. (109 aa)
BN2166_0018080Histone H2B; Belongs to the histone H2B family. (138 aa)
BN2166_0018210Histone H2B; Belongs to the histone H2B family. (125 aa)
BN2166_0031440FGENESH: predicted gene_6.66 protein. (1054 aa)
BN2166_0034040annotation not available (542 aa)
BN2166_0016820Thioredoxin-like fold. (241 aa)
BN2166_0019520Ribosomal protein subunit Mrp10. (137 aa)
BN2166_0035960annotation not available (644 aa)
BN2166_0031270BY PROTMAP: gi|342319582|gb|EGU11529.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (606 aa)
BN2166_0051160annotation not available (795 aa)
BN2166_0065340BY PROTMAP: gi|472585593|gb|EMS23144.1| thioredoxin [Rhodosporidium toruloides NP11]. (103 aa)
BN2166_0066340Protein kinase-like domain-containing protein. (511 aa)
BN2166_0061460FGENESH: predicted gene_12.306 protein. (1434 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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