STRINGSTRING
BN2166_0045720 BN2166_0045720 BN2166_0065340 BN2166_0065340 BN2166_0066340 BN2166_0066340 BN2166_0061460 BN2166_0061460 BN2166_0063310 BN2166_0063310 BN2166_0064910 BN2166_0064910 BN2166_0067780 BN2166_0067780 BN2166_0067660 BN2166_0067660 BN2166_0068560 BN2166_0068560 BN2166_0064920 BN2166_0064920 BN2166_0005040 BN2166_0005040 BN2166_0003390 BN2166_0003390 BN2166_0009700 BN2166_0009700 BN2166_0009970 BN2166_0009970 BN2166_0015520 BN2166_0015520 BN2166_0004910 BN2166_0004910 BN2166_0009760 BN2166_0009760 BN2166_0023450 BN2166_0023450 BN2166_0011560 BN2166_0011560 BN2166_0015580 BN2166_0015580 BN2166_0018080 BN2166_0018080 BN2166_0018210 BN2166_0018210 BN2166_0019510 BN2166_0019510 BN2166_0021260 BN2166_0021260 BN2166_0031440 BN2166_0031440 BN2166_0029780 BN2166_0029780 BN2166_0034040 BN2166_0034040 BN2166_0016820 BN2166_0016820 BN2166_0018570 BN2166_0018570 BN2166_0019520 BN2166_0019520 BN2166_0045950 BN2166_0045950 BN2166_0035760 BN2166_0035760 BN2166_0035960 BN2166_0035960 BN2166_0036110 BN2166_0036110 BN2166_0029020 BN2166_0029020 BN2166_0042310 BN2166_0042310 BN2166_0031270 BN2166_0031270 BN2166_0044710 BN2166_0044710 BN2166_0035770 BN2166_0035770 BN2166_0051160 BN2166_0051160 BN2166_0040220 BN2166_0040220 BN2166_0064900 BN2166_0064900
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0045720Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (743 aa)
BN2166_0065340BY PROTMAP: gi|472585593|gb|EMS23144.1| thioredoxin [Rhodosporidium toruloides NP11]. (103 aa)
BN2166_0066340Protein kinase-like domain-containing protein. (511 aa)
BN2166_0061460FGENESH: predicted gene_12.306 protein. (1434 aa)
BN2166_0063310Histone chaperone, ASF1-like protein. (213 aa)
BN2166_0064910FGENESH: predicted gene_14.41 protein. (914 aa)
BN2166_0067780FGENESH: predicted gene_15.59 protein. (540 aa)
BN2166_0067660annotation not available (813 aa)
BN2166_0068560Uncharacterized protein. (151 aa)
BN2166_0064920AAA_23 domain-containing protein. (197 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0003390annotation not available (153 aa)
BN2166_0009700Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (439 aa)
BN2166_0009970Histone H2B; Belongs to the histone H2B family. (144 aa)
BN2166_0015520RHTO0S11e00144g1_1. (109 aa)
BN2166_0004910Thioredoxin; Belongs to the thioredoxin family. (108 aa)
BN2166_0009760Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (347 aa)
BN2166_0023450Belongs to the ubiquitin-conjugating enzyme family. (184 aa)
BN2166_0011560annotation not available (1570 aa)
BN2166_0015580Thioredoxin. (109 aa)
BN2166_0018080Histone H2B; Belongs to the histone H2B family. (138 aa)
BN2166_0018210Histone H2B; Belongs to the histone H2B family. (125 aa)
BN2166_0019510ANAPC5 domain-containing protein. (680 aa)
BN2166_0021260Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (570 aa)
BN2166_0031440FGENESH: predicted gene_6.66 protein. (1054 aa)
BN2166_0029780Uncharacterized protein. (103 aa)
BN2166_0034040annotation not available (542 aa)
BN2166_0016820Thioredoxin-like fold. (241 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0019520Ribosomal protein subunit Mrp10. (137 aa)
BN2166_0045950Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily. (3051 aa)
BN2166_0035760Protein kinase domain-containing protein. (345 aa)
BN2166_0035960annotation not available (644 aa)
BN2166_0036110Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1004 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0031270BY PROTMAP: gi|342319582|gb|EGU11529.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (606 aa)
BN2166_0044710BY PROTMAP: gi|342321520|gb|EGU13453.1| Helicase SWR1 [Rhodotorula glutinis ATCC 204091]. (1703 aa)
BN2166_0035770FGENESH: predicted gene_6.499 protein. (94 aa)
BN2166_0051160annotation not available (795 aa)
BN2166_0040220BY PROTMAP: gi|814542956|emb|CEQ39987.1| SPOSA6832_01580 [Sporidiobolus salmonicolor]; Belongs to the ubiquitin-conjugating enzyme family. (145 aa)
BN2166_0064900Uncharacterized protein. (189 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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