17 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0004860	XRN_N domain-containing protein. (205 aa)
	BN2166_0004870	FGENESH: predicted gene_1.487 protein. (1221 aa)
	BN2166_0043600	FGENESH: predicted gene_8.215 protein. (875 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0047440	Uncharacterized protein. (804 aa)
	BN2166_0050140	BY PROTMAP: gi\|342321292\|gb\|EGU13226.1\| Transportin-PC [Rhodotorula glutinis ATCC 204091]. (921 aa)
	BN2166_0053210	Ribosomal protein S5 domain 2-type fold. (331 aa)
	TIF35	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (296 aa)
	BN2166_0066550	FGENESH: predicted gene_14.205 protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1715 aa)
	BN2166_0043570	annotation not available (813 aa)
	BN2166_0068850	annotation not available (2160 aa)
	BN2166_0069040	Dcp2, box A domain-domain containing protein. (855 aa)
	BN2166_0070420	Belongs to the nucleosome assembly protein (NAP) family. (278 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0003390	BN2166_0004860	A0A0K3C6J0	A0A0K3C805	annotation not available	XRN_N domain-containing protein.	0.649
BN2166_0003390	BN2166_0004870	A0A0K3C6J0	A0A0K3CBV7	annotation not available	FGENESH: predicted gene_1.487 protein.	0.649
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0029020	A0A0K3C6J0	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.938
BN2166_0003390	BN2166_0042310	A0A0K3C6J0	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.937
BN2166_0003390	TIF35	A0A0K3C6J0	A0A0K3CM51	annotation not available	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.	0.922
BN2166_0004860	BN2166_0003390	A0A0K3C805	A0A0K3C6J0	XRN_N domain-containing protein.	annotation not available	0.649
BN2166_0004860	BN2166_0004870	A0A0K3C805	A0A0K3CBV7	XRN_N domain-containing protein.	FGENESH: predicted gene_1.487 protein.	0.946
BN2166_0004860	BN2166_0005040	A0A0K3C805	A0A0K3C739	XRN_N domain-containing protein.	Uncharacterized protein.	0.570
BN2166_0004860	BN2166_0018570	A0A0K3C805	A0A0K3CFL1	XRN_N domain-containing protein.	Uncharacterized protein.	0.422
BN2166_0004860	BN2166_0029020	A0A0K3C805	A0A0K3CII4	XRN_N domain-containing protein.	Ubiquitin-related domain-containing protein.	0.422
BN2166_0004860	BN2166_0042310	A0A0K3C805	A0A0K3CIR4	XRN_N domain-containing protein.	FGENESH: predicted gene_8.86 protein.	0.422
BN2166_0004860	BN2166_0043570	A0A0K3C805	A0A0K3CMU0	XRN_N domain-containing protein.	annotation not available	0.773
BN2166_0004860	BN2166_0043600	A0A0K3C805	A0A0K3CFK4	XRN_N domain-containing protein.	FGENESH: predicted gene_8.215 protein.	0.773
BN2166_0004860	BN2166_0050140	A0A0K3C805	A0A0K3CJP4	XRN_N domain-containing protein.	BY PROTMAP: gi\|342321292\|gb\|EGU13226.1\| Transportin-PC [Rhodotorula glutinis ATCC 204091].	0.620
BN2166_0004860	BN2166_0053210	A0A0K3C805	A0A0K3CLZ1	XRN_N domain-containing protein.	Ribosomal protein S5 domain 2-type fold.	0.666
BN2166_0004860	BN2166_0069040	A0A0K3C805	A0A0K3CPX9	XRN_N domain-containing protein.	Dcp2, box A domain-domain containing protein.	0.920
BN2166_0004870	BN2166_0003390	A0A0K3CBV7	A0A0K3C6J0	FGENESH: predicted gene_1.487 protein.	annotation not available	0.649
BN2166_0004870	BN2166_0004860	A0A0K3CBV7	A0A0K3C805	FGENESH: predicted gene_1.487 protein.	XRN_N domain-containing protein.	0.946
BN2166_0004870	BN2166_0005040	A0A0K3CBV7	A0A0K3C739	FGENESH: predicted gene_1.487 protein.	Uncharacterized protein.	0.570

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