32 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0067290	Uncharacterized protein. (690 aa)
	BN2166_0067270	Uncharacterized protein. (215 aa)
	BN2166_0073480	annotation not available (846 aa)
	BN2166_0072280	FGENESH: predicted gene_17.86 protein. (674 aa)
	BN2166_0072290	Uncharacterized protein. (178 aa)
	BN2166_0067340	FGENESH: predicted gene_15.15 protein. (241 aa)
	BN2166_0033460	Uncharacterized protein. (419 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0033190	FGENESH: predicted gene_6.241 protein. (673 aa)
	BN2166_0035500	Camp-dependent protein kinase regulatory subunit. (551 aa)
	BN2166_0005620	P-loop containing nucleoside triphosphate hydrolase protein. (841 aa)
	BN2166_0016030	MBOAT, membrane-bound O-acyltransferase family-domain containing protein; Belongs to the membrane-bound acyltransferase family. (665 aa)
	BN2166_0000870	FGENESH: predicted gene_1.87 protein. (416 aa)
	BN2166_0025500	Uncharacterized protein. (688 aa)
	BN2166_0024550	FGENESH: predicted gene_4.231 protein. (473 aa)
	BN2166_0052400	BY PROTMAP: gi\|342319250\|gb\|EGU11200.1\| Enzyme activator [Rhodotorula glutinis ATCC 204091]. (928 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0050240	annotation not available (1080 aa)
	BN2166_0009410	FGENESH: predicted gene_2.110 protein. (325 aa)
	BN2166_0009830	annotation not available (814 aa)
	BN2166_0007490	annotation not available (441 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0000960	FGENESH: predicted gene_1.96 protein. (675 aa)
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0009200	annotation not available (600 aa)
	BN2166_0003350	FGENESH: predicted gene_1.335 protein. (322 aa)
	BN2166_0048390	FGENESH: predicted gene_9.185 protein. (101 aa)
	BN2166_0048760	annotation not available (472 aa)
	BN2166_0049510	Belongs to the protein kinase superfamily. (493 aa)
	BN2166_0067350	FGENESH: predicted gene_15.16 protein. (474 aa)
	BN2166_0063080	BY PROTMAP: gi\|342319493\|gb\|EGU11441.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1161 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0000870	BN2166_0003390	A0A0K3CAQ0	A0A0K3C6J0	FGENESH: predicted gene_1.87 protein.	annotation not available	0.594
BN2166_0000870	BN2166_0005040	A0A0K3CAQ0	A0A0K3C739	FGENESH: predicted gene_1.87 protein.	Uncharacterized protein.	0.594
BN2166_0000870	BN2166_0018570	A0A0K3CAQ0	A0A0K3CFL1	FGENESH: predicted gene_1.87 protein.	Uncharacterized protein.	0.439
BN2166_0000870	BN2166_0029020	A0A0K3CAQ0	A0A0K3CII4	FGENESH: predicted gene_1.87 protein.	Ubiquitin-related domain-containing protein.	0.439
BN2166_0000870	BN2166_0042310	A0A0K3CAQ0	A0A0K3CIR4	FGENESH: predicted gene_1.87 protein.	FGENESH: predicted gene_8.86 protein.	0.439
BN2166_0000870	BN2166_0048390	A0A0K3CAQ0	A0A061AXA9	FGENESH: predicted gene_1.87 protein.	FGENESH: predicted gene_9.185 protein.	0.593
BN2166_0000960	BN2166_0003390	A0A0K3C702	A0A0K3C6J0	FGENESH: predicted gene_1.96 protein.	annotation not available	0.594
BN2166_0000960	BN2166_0005040	A0A0K3C702	A0A0K3C739	FGENESH: predicted gene_1.96 protein.	Uncharacterized protein.	0.594
BN2166_0000960	BN2166_0018570	A0A0K3C702	A0A0K3CFL1	FGENESH: predicted gene_1.96 protein.	Uncharacterized protein.	0.439
BN2166_0000960	BN2166_0029020	A0A0K3C702	A0A0K3CII4	FGENESH: predicted gene_1.96 protein.	Ubiquitin-related domain-containing protein.	0.439
BN2166_0000960	BN2166_0042310	A0A0K3C702	A0A0K3CIR4	FGENESH: predicted gene_1.96 protein.	FGENESH: predicted gene_8.86 protein.	0.439
BN2166_0000960	BN2166_0048390	A0A0K3C702	A0A061AXA9	FGENESH: predicted gene_1.96 protein.	FGENESH: predicted gene_9.185 protein.	0.593
BN2166_0003390	BN2166_0000870	A0A0K3C6J0	A0A0K3CAQ0	annotation not available	FGENESH: predicted gene_1.87 protein.	0.594
BN2166_0003390	BN2166_0000960	A0A0K3C6J0	A0A0K3C702	annotation not available	FGENESH: predicted gene_1.96 protein.	0.594
BN2166_0003390	BN2166_0005620	A0A0K3C6J0	A0A0K3CC16	annotation not available	P-loop containing nucleoside triphosphate hydrolase protein.	0.862
BN2166_0003390	BN2166_0009200	A0A0K3C6J0	A0A0K3C5S2	annotation not available	annotation not available	0.712
BN2166_0003390	BN2166_0009410	A0A0K3C6J0	A0A0K3C986	annotation not available	FGENESH: predicted gene_2.110 protein.	0.712
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0025500	A0A0K3C6J0	A0A0K3CAA5	annotation not available	Uncharacterized protein.	0.594
BN2166_0003390	BN2166_0029020	A0A0K3C6J0	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.938

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