29 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

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protein homology

Your Input:
	BN2166_0002170	DNA replication factor A subunit Ssb3. (108 aa)
	BN2166_0002500	BY PROTMAP: gi\|342319348\|gb\|EGU11297.1\| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (652 aa)
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0008190	annotation not available (1088 aa)
	BN2166_0008540	FGENESH: predicted gene_2.23 protein. (1833 aa)
	BN2166_0010080	Uncharacterized protein. (459 aa)
	BN2166_0014180	annotation not available (1032 aa)
	BN2166_0017610	FGENESH: predicted gene_3.212 protein. (1777 aa)
	BN2166_0020680	FGENESH: predicted gene_3.519 protein. (1459 aa)
	BN2166_0024390	FGENESH: predicted gene_4.215 protein. (2233 aa)
	BN2166_0022210	FGENESH: predicted gene_3.672 protein. (781 aa)
	BN2166_0024380	FGENESH: predicted gene_4.214 protein. (2249 aa)
	BN2166_0039050	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
	BN2166_0030630	Uncharacterized protein. (148 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0047540	Uncharacterized protein. (1216 aa)
	BN2166_0047260	FGENESH: predicted gene_9.72 protein. (1762 aa)
	BN2166_0061100	BY PROTMAP: gi\|814543146\|emb\|CEQ39523.1\| SPOSA6832_01050 [Sporidiobolus salmonicolor]. (389 aa)
	BN2166_0066300	annotation not available (1334 aa)
	BN2166_0070030	annotation not available (1384 aa)
	BN2166_0072510	FGENESH: predicted gene_17.109 protein. (1594 aa)
	BN2166_0074810	FGENESH: predicted gene_20.4 protein. (781 aa)
	BN2166_0075110	FGENESH: predicted gene_25.1 protein. (987 aa)
	BN2166_0074820	FGENESH: predicted gene_20.5 protein. (1374 aa)
	BN2166_0075020	FGENESH: predicted gene_24.1 protein. (390 aa)
	BN2166_0075320	FGENESH: predicted gene_29.1 protein. (1456 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0002170	BN2166_0039050	A0A061AG45	A0A0K3CE99	DNA replication factor A subunit Ssb3.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.860
BN2166_0002500	BN2166_0039050	A0A0K3C485	A0A0K3CE99	BY PROTMAP: gi\|342319348\|gb\|EGU11297.1\| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.533
BN2166_0003390	BN2166_0014180	A0A0K3C6J0	A0A0K3CA80	annotation not available	annotation not available	0.624
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0029020	A0A0K3C6J0	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.938
BN2166_0003390	BN2166_0039050	A0A0K3C6J0	A0A0K3CE99	annotation not available	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.640
BN2166_0003390	BN2166_0042310	A0A0K3C6J0	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.937
BN2166_0003390	BN2166_0047540	A0A0K3C6J0	A0A0K3CIX9	annotation not available	Uncharacterized protein.	0.939
BN2166_0005040	BN2166_0014180	A0A0K3C739	A0A0K3CA80	Uncharacterized protein.	annotation not available	0.624
BN2166_0005040	BN2166_0018570	A0A0K3C739	A0A0K3CFL1	Uncharacterized protein.	Uncharacterized protein.	0.773
BN2166_0005040	BN2166_0029020	A0A0K3C739	A0A0K3CII4	Uncharacterized protein.	Ubiquitin-related domain-containing protein.	0.773
BN2166_0005040	BN2166_0039050	A0A0K3C739	A0A0K3CE99	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.624
BN2166_0005040	BN2166_0042310	A0A0K3C739	A0A0K3CIR4	Uncharacterized protein.	FGENESH: predicted gene_8.86 protein.	0.773
BN2166_0005040	BN2166_0047540	A0A0K3C739	A0A0K3CIX9	Uncharacterized protein.	Uncharacterized protein.	0.868
BN2166_0008190	BN2166_0039050	A0A0K3C7X9	A0A0K3CE99	annotation not available	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.533
BN2166_0008540	BN2166_0039050	A0A0K3C811	A0A0K3CE99	FGENESH: predicted gene_2.23 protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.533
BN2166_0010080	BN2166_0039050	A0A0K3C920	A0A0K3CE99	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.533
BN2166_0014180	BN2166_0003390	A0A0K3CA80	A0A0K3C6J0	annotation not available	annotation not available	0.624
BN2166_0014180	BN2166_0005040	A0A0K3CA80	A0A0K3C739	annotation not available	Uncharacterized protein.	0.624
BN2166_0014180	BN2166_0018570	A0A0K3CA80	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.565

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