8 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0066400	annotation not available (857 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0051000	TPR domain-containing protein. (2015 aa)
	BN2166_0007880	annotation not available (261 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0029020	A0A0K3C6J0	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.938
BN2166_0003390	BN2166_0042310	A0A0K3C6J0	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.937
BN2166_0003390	BN2166_0066400	A0A0K3C6J0	A0A0K3CMB2	annotation not available	annotation not available	0.583
BN2166_0005040	BN2166_0018570	A0A0K3C739	A0A0K3CFL1	Uncharacterized protein.	Uncharacterized protein.	0.773
BN2166_0005040	BN2166_0029020	A0A0K3C739	A0A0K3CII4	Uncharacterized protein.	Ubiquitin-related domain-containing protein.	0.773
BN2166_0005040	BN2166_0042310	A0A0K3C739	A0A0K3CIR4	Uncharacterized protein.	FGENESH: predicted gene_8.86 protein.	0.773
BN2166_0018570	BN2166_0003390	A0A0K3CFL1	A0A0K3C6J0	Uncharacterized protein.	annotation not available	0.982
BN2166_0018570	BN2166_0005040	A0A0K3CFL1	A0A0K3C739	Uncharacterized protein.	Uncharacterized protein.	0.773
BN2166_0018570	BN2166_0066400	A0A0K3CFL1	A0A0K3CMB2	Uncharacterized protein.	annotation not available	0.580
BN2166_0029020	BN2166_0003390	A0A0K3CII4	A0A0K3C6J0	Ubiquitin-related domain-containing protein.	annotation not available	0.938
BN2166_0029020	BN2166_0005040	A0A0K3CII4	A0A0K3C739	Ubiquitin-related domain-containing protein.	Uncharacterized protein.	0.773
BN2166_0029020	BN2166_0066400	A0A0K3CII4	A0A0K3CMB2	Ubiquitin-related domain-containing protein.	annotation not available	0.580
BN2166_0042310	BN2166_0003390	A0A0K3CIR4	A0A0K3C6J0	FGENESH: predicted gene_8.86 protein.	annotation not available	0.937
BN2166_0042310	BN2166_0005040	A0A0K3CIR4	A0A0K3C739	FGENESH: predicted gene_8.86 protein.	Uncharacterized protein.	0.773
BN2166_0042310	BN2166_0066400	A0A0K3CIR4	A0A0K3CMB2	FGENESH: predicted gene_8.86 protein.	annotation not available	0.580
BN2166_0066400	BN2166_0003390	A0A0K3CMB2	A0A0K3C6J0	annotation not available	annotation not available	0.583
BN2166_0066400	BN2166_0018570	A0A0K3CMB2	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.580
BN2166_0066400	BN2166_0029020	A0A0K3CMB2	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.580
BN2166_0066400	BN2166_0042310	A0A0K3CMB2	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.580

Server load: low (30%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About