STRINGSTRING
BN2166_0047400 BN2166_0047400 BN2166_0064520 BN2166_0064520 BN2166_0072770 BN2166_0072770 BN2166_0018570 BN2166_0018570 BN2166_0015970 BN2166_0015970 BN2166_0028130 BN2166_0028130 BN2166_0039050 BN2166_0039050 BN2166_0026630 BN2166_0026630 BN2166_0035600 BN2166_0035600 BN2166_0006320 BN2166_0006320 BN2166_0018610 BN2166_0018610 BN2166_0004570 BN2166_0004570 BN2166_0016890 BN2166_0016890 BN2166_0029020 BN2166_0029020 BN2166_0042310 BN2166_0042310 BN2166_0054030 BN2166_0054030 BN2166_0057990 BN2166_0057990 BN2166_0059430 BN2166_0059430 BN2166_0060380 BN2166_0060380 BN2166_0063990 BN2166_0063990 BN2166_0064690 BN2166_0064690 BN2166_0047320 BN2166_0047320 BN2166_0011180 BN2166_0011180 BN2166_0007140 BN2166_0007140 BN2166_0070430 BN2166_0070430 BN2166_0005040 BN2166_0005040 BN2166_0003390 BN2166_0003390 BN2166_0005150 BN2166_0005150 BN2166_0036510 BN2166_0036510
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0047400annotation not available (893 aa)
BN2166_0064520BY PROTMAP: gi|472585507|gb|EMS23058.1| bloom syndrome protein [Rhodosporidium toruloides NP11]. (1529 aa)
BN2166_0072770Rad51 domain-containing protein. (361 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0015970DUF1767 domain-containing protein. (430 aa)
BN2166_0028130FGENESH: predicted gene_5.358 protein. (325 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0026630annotation not available (351 aa)
BN2166_0035600DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1012 aa)
BN2166_0006320Rad51-associated protein Brh2. (1137 aa)
BN2166_0018610annotation not available (709 aa)
BN2166_0004570DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (345 aa)
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0054030Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (686 aa)
BN2166_0057990Putative Serine/threonine protein kinase FSK. (750 aa)
BN2166_0059430annotation not available (762 aa)
BN2166_0060380BY PROTMAP: gi|472586258|gb|EMS23786.1| 3'-5' exonuclease [Rhodosporidium toruloides NP11]. (335 aa)
BN2166_0063990Protein kinase-like domain-containing protein. (763 aa)
BN2166_0064690BY PROTMAP: gi|342319058|gb|EGU11010.1| putative RAD57 protein [Rhodotorula glutinis ATCC 204091]. (556 aa)
BN2166_0047320BY PROTMAP: gi|342319987|gb|EGU11932.1| putative Endonuclease [Rhodotorula glutinis ATCC 204091]. (1073 aa)
BN2166_0011180BY PROTMAP: gi|342319958|gb|EGU11903.1| RAD51-like protein 2 ISS [Rhodotorula glutinis ATCC 204091]. (297 aa)
BN2166_0007140BY PROTMAP: gi|647394924|emb|CDR36159.1| RHTO0S01e15544g1_1 [Rhodosporidium toruloides]. (591 aa)
BN2166_0070430Protein kinase-like domain-containing protein. (533 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0003390annotation not available (153 aa)
BN2166_0005150annotation not available (663 aa)
BN2166_0036510annotation not available (1160 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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