30 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0000260	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (467 aa)
	BN2166_0000400	Ubiquitin carboxyl-terminal hydrolase. (233 aa)
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0016800	annotation not available (1158 aa)
	BN2166_0007880	annotation not available (261 aa)
	BN2166_0031300	Belongs to the actin family. (794 aa)
	BN2166_0024960	Uncharacterized protein. (735 aa)
	BN2166_0027730	Putative DNA helicase INO80. (1591 aa)
	BN2166_0017870	NmrA domain-containing protein. (287 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0032310	Ubiquitin carboxyl-terminal hydrolase. (328 aa)
	BN2166_0051000	TPR domain-containing protein. (2015 aa)
	BN2166_0046090	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (798 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0031670	BY PROTMAP: gi\|342319608\|gb\|EGU11555.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (694 aa)
	BN2166_0033070	annotation not available (266 aa)
	BN2166_0051960	BY PROTMAP: gi\|342319269\|gb\|EGU11219.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1144 aa)
	BN2166_0064850	annotation not available (289 aa)
	BN2166_0065600	annotation not available (392 aa)
	BN2166_0058590	BY PROTMAP: gi\|647398513\|emb\|CDR42529.1\| RHTO0S07e00518g1_1 [Rhodosporidium toruloides]. (562 aa)
	BN2166_0061590	BY PROTMAP: gi\|472586134\|gb\|EMS23662.1\| nucleus protein [Rhodosporidium toruloides NP11]. (198 aa)
	BN2166_0065060	Proteasome complex subunit Rpn13 ubiquitin receptor-domain containing protein. (320 aa)
	BN2166_0067830	FGENESH: predicted gene_15.64 protein. (72 aa)
	BN2166_0067410	FGENESH: predicted gene_15.22 protein. (183 aa)
	BN2166_0070730	FGENESH: predicted gene_16.99 protein. (810 aa)
	BN2166_0073810	annotation not available (547 aa)
	BN2166_0069770	Temperature associated repressor. (289 aa)
	BN2166_0070570	NmrA domain-containing protein. (287 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0000260	BN2166_0003390	A0A0K3C6S2	A0A0K3C6J0	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	annotation not available	0.480
BN2166_0000260	BN2166_0005040	A0A0K3C6S2	A0A0K3C739	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.474
BN2166_0000260	BN2166_0018570	A0A0K3C6S2	A0A0K3CFL1	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Uncharacterized protein.	0.405
BN2166_0000260	BN2166_0027730	A0A0K3C6S2	A0A0K3CEC2	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Putative DNA helicase INO80.	0.981
BN2166_0000260	BN2166_0029020	A0A0K3C6S2	A0A0K3CII4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Ubiquitin-related domain-containing protein.	0.405
BN2166_0000260	BN2166_0031300	A0A0K3C6S2	A0A0K3CC32	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Belongs to the actin family.	0.995
BN2166_0000260	BN2166_0032310	A0A0K3C6S2	A0A0K3CFT2	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Ubiquitin carboxyl-terminal hydrolase.	0.843
BN2166_0000260	BN2166_0033070	A0A0K3C6S2	A0A0K3CJT6	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	annotation not available	0.447
BN2166_0000260	BN2166_0042310	A0A0K3C6S2	A0A0K3CIR4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	FGENESH: predicted gene_8.86 protein.	0.405
BN2166_0000260	BN2166_0046090	A0A0K3C6S2	A0A0K3CIG1	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.	0.989
BN2166_0000260	BN2166_0051960	A0A0K3C6S2	A0A0K3CLM4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	BY PROTMAP: gi\|342319269\|gb\|EGU11219.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].	0.939
BN2166_0000260	BN2166_0058590	A0A0K3C6S2	A0A0K3CM24	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	BY PROTMAP: gi\|647398513\|emb\|CDR42529.1\| RHTO0S07e00518g1_1 [Rhodosporidium toruloides].	0.972
BN2166_0000260	BN2166_0061590	A0A0K3C6S2	A0A0K3CMV6	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	BY PROTMAP: gi\|472586134\|gb\|EMS23662.1\| nucleus protein [Rhodosporidium toruloides NP11].	0.994
BN2166_0000260	BN2166_0067410	A0A0K3C6S2	A0A0K3CQZ2	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	FGENESH: predicted gene_15.22 protein.	0.981
BN2166_0000260	BN2166_0067830	A0A0K3C6S2	A0A0K3CQF4	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	FGENESH: predicted gene_15.64 protein.	0.437
BN2166_0000260	BN2166_0070730	A0A0K3C6S2	A0A0K3CR82	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	FGENESH: predicted gene_16.99 protein.	0.646
BN2166_0000400	BN2166_0003390	A0A0K3C3L1	A0A0K3C6J0	Ubiquitin carboxyl-terminal hydrolase.	annotation not available	0.965
BN2166_0000400	BN2166_0005040	A0A0K3C3L1	A0A0K3C739	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.796
BN2166_0000400	BN2166_0018570	A0A0K3C3L1	A0A0K3CFL1	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.925
BN2166_0000400	BN2166_0024960	A0A0K3C3L1	A0A0K3CDK6	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.601

page 1 of 21

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About