STRINGSTRING
BN2166_0016890 BN2166_0016890 BN2166_0072770 BN2166_0072770 BN2166_0065470 BN2166_0065470 BN2166_0064920 BN2166_0064920 BN2166_0064520 BN2166_0064520 BN2166_0074460 BN2166_0074460 BN2166_0060970 BN2166_0060970 BN2166_0070430 BN2166_0070430 BN2166_0064910 BN2166_0064910 BN2166_0074350 BN2166_0074350 BN2166_0067240 BN2166_0067240 BN2166_0072000 BN2166_0072000 BN2166_0047320 BN2166_0047320 BN2166_0064690 BN2166_0064690 BN2166_0063990 BN2166_0063990 BN2166_0063890 BN2166_0063890 BN2166_0045720 BN2166_0045720 BN2166_0063590 BN2166_0063590 BN2166_0060380 BN2166_0060380 BN2166_0062440 BN2166_0062440 BN2166_0059430 BN2166_0059430 BN2166_0057990 BN2166_0057990 BN2166_0064900 BN2166_0064900 BN2166_0054480 BN2166_0054480 BN2166_0054030 BN2166_0054030 BN2166_0055740 BN2166_0055740 BN2166_0033270 BN2166_0033270 BN2166_0050590 BN2166_0050590 BN2166_0042310 BN2166_0042310 BN2166_0029020 BN2166_0029020 BN2166_0025470 BN2166_0025470 BN2166_0036510 BN2166_0036510 BN2166_0040640 BN2166_0040640 BN2166_0036580 BN2166_0036580 BN2166_0047400 BN2166_0047400 BN2166_0045950 BN2166_0045950 BN2166_0018570 BN2166_0018570 BN2166_0017520 BN2166_0017520 BN2166_0042650 BN2166_0042650 BN2166_0015970 BN2166_0015970 BN2166_0029630 BN2166_0029630 BN2166_0032990 BN2166_0032990 BN2166_0028330 BN2166_0028330 BN2166_0028130 BN2166_0028130 BN2166_0039050 BN2166_0039050 BN2166_0026630 BN2166_0026630 BN2166_0012570 BN2166_0012570 BN2166_0010420 BN2166_0010420 BN2166_0024180 BN2166_0024180 BN2166_0035600 BN2166_0035600 BN2166_0021260 BN2166_0021260 BN2166_0006320 BN2166_0006320 BN2166_0023090 BN2166_0023090 BN2166_0018610 BN2166_0018610 BN2166_0004570 BN2166_0004570 BN2166_0018210 BN2166_0018210 BN2166_0018080 BN2166_0018080 BN2166_0020340 BN2166_0020340 BN2166_0011180 BN2166_0011180 BN2166_0013090 BN2166_0013090 BN2166_0009240 BN2166_0009240 BN2166_0017750 BN2166_0017750 BN2166_0005410 BN2166_0005410 BN2166_0007140 BN2166_0007140 BN2166_0002310 BN2166_0002310 BN2166_0005040 BN2166_0005040 BN2166_0012900 BN2166_0012900 BN2166_0003390 BN2166_0003390 BN2166_0005150 BN2166_0005150 BN2166_0009970 BN2166_0009970 BN2166_0073200 BN2166_0073200
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
BN2166_0072770Rad51 domain-containing protein. (361 aa)
BN2166_0065470BY PROTMAP: gi|342319021|gb|EGU10973.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1208 aa)
BN2166_0064920AAA_23 domain-containing protein. (197 aa)
BN2166_0064520BY PROTMAP: gi|472585507|gb|EMS23058.1| bloom syndrome protein [Rhodosporidium toruloides NP11]. (1529 aa)
BN2166_0074460annotation not available (661 aa)
BN2166_0060970annotation not available (561 aa)
BN2166_0070430Protein kinase-like domain-containing protein. (533 aa)
BN2166_0064910FGENESH: predicted gene_14.41 protein. (914 aa)
BN2166_0074350FGENESH: predicted gene_18.86 protein. (726 aa)
BN2166_0067240BY PROTMAP: gi|342321083|gb|EGU13020.1| Alternative cyclin Pcl1 [Rhodotorula glutinis ATCC 204091]. (428 aa)
BN2166_0072000BY PROTMAP: gi|342320789|gb|EGU12728.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (1449 aa)
BN2166_0047320BY PROTMAP: gi|342319987|gb|EGU11932.1| putative Endonuclease [Rhodotorula glutinis ATCC 204091]. (1073 aa)
BN2166_0064690BY PROTMAP: gi|342319058|gb|EGU11010.1| putative RAD57 protein [Rhodotorula glutinis ATCC 204091]. (556 aa)
BN2166_0063990Protein kinase-like domain-containing protein. (763 aa)
BN2166_0063890annotation not available (778 aa)
BN2166_0045720Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (743 aa)
BN2166_0063590Belongs to the cyclin family. (472 aa)
BN2166_0060380BY PROTMAP: gi|472586258|gb|EMS23786.1| 3'-5' exonuclease [Rhodosporidium toruloides NP11]. (335 aa)
BN2166_0062440annotation not available (313 aa)
BN2166_0059430annotation not available (762 aa)
BN2166_0057990Putative Serine/threonine protein kinase FSK. (750 aa)
BN2166_0064900Uncharacterized protein. (189 aa)
BN2166_0054480annotation not available (875 aa)
BN2166_0054030Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (686 aa)
BN2166_0055740FGENESH: predicted gene_11.70 protein. (183 aa)
BN2166_0033270annotation not available (424 aa)
BN2166_0050590BY PROTMAP: gi|647403136|emb|CDR49294.1| RHTO0S25e00650g1_1 [Rhodosporidium toruloides]; Belongs to the PI3/PI4-kinase family. (2634 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0025470FGENESH: predicted gene_5.92 protein. (378 aa)
BN2166_0036510annotation not available (1160 aa)
BN2166_0040640FGENESH: predicted gene_7.449 protein. (534 aa)
BN2166_0036580Chromosome segregation in meiosis protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (363 aa)
BN2166_0047400annotation not available (893 aa)
BN2166_0045950Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily. (3051 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0017520BY PROTMAP: gi|472583956|gb|EMS21572.1| DNA ligase [Rhodosporidium toruloides NP11]. (545 aa)
BN2166_0042650Timeless protein-domain containing protein. (1214 aa)
BN2166_0015970DUF1767 domain-containing protein. (430 aa)
BN2166_0029630annotation not available (1156 aa)
BN2166_0032990annotation not available (674 aa)
BN2166_0028330FGENESH: predicted gene_5.378 protein. (732 aa)
BN2166_0028130FGENESH: predicted gene_5.358 protein. (325 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0026630annotation not available (351 aa)
BN2166_0012570annotation not available (410 aa)
BN2166_0010420BY PROTMAP: gi|342319914|gb|EGU11859.1| Membrane protein [Rhodotorula glutinis ATCC 204091]. (1070 aa)
BN2166_0024180annotation not available (904 aa)
BN2166_0035600DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1012 aa)
BN2166_0021260Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (570 aa)
BN2166_0006320Rad51-associated protein Brh2. (1137 aa)
BN2166_0023090BY PROTMAP: gi|342319803|gb|EGU11749.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (564 aa)
BN2166_0018610annotation not available (709 aa)
BN2166_0004570DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (345 aa)
BN2166_0018210Histone H2B; Belongs to the histone H2B family. (125 aa)
BN2166_0018080Histone H2B; Belongs to the histone H2B family. (138 aa)
BN2166_0020340annotation not available (1209 aa)
BN2166_0011180BY PROTMAP: gi|342319958|gb|EGU11903.1| RAD51-like protein 2 ISS [Rhodotorula glutinis ATCC 204091]. (297 aa)
BN2166_0013090FGENESH: predicted gene_2.478 protein. (388 aa)
BN2166_0009240Serine/threonine-protein phosphatase. (313 aa)
BN2166_0017750FGENESH: predicted gene_3.226 protein. (324 aa)
BN2166_0005410FGENESH: predicted gene_1.541 protein. (1044 aa)
BN2166_0007140BY PROTMAP: gi|647394924|emb|CDR36159.1| RHTO0S01e15544g1_1 [Rhodosporidium toruloides]. (591 aa)
BN2166_0002310DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (364 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0012900DNA ligase. (1333 aa)
BN2166_0003390annotation not available (153 aa)
BN2166_0005150annotation not available (663 aa)
BN2166_0009970Histone H2B; Belongs to the histone H2B family. (144 aa)
BN2166_0073200Serine/threonine-protein phosphatase. (306 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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