STRINGSTRING
BN2166_0054770 BN2166_0054770 BN2166_0048390 BN2166_0048390 BN2166_0008900 BN2166_0008900 BN2166_0003390 BN2166_0003390 BN2166_0004490 BN2166_0004490 BN2166_0005040 BN2166_0005040 BN2166_0009130 BN2166_0009130 BN2166_0039050 BN2166_0039050 BN2166_0018570 BN2166_0018570 BN2166_0032610 BN2166_0032610 BN2166_0040240 BN2166_0040240 BN2166_0027320 BN2166_0027320 BN2166_0029020 BN2166_0029020 BN2166_0042310 BN2166_0042310 BN2166_0066250 BN2166_0066250
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0054770ERCC4 domain-containing protein. (1060 aa)
BN2166_0048390FGENESH: predicted gene_9.185 protein. (101 aa)
BN2166_0008900XPC-binding domain-domain containing protein. (403 aa)
BN2166_0003390annotation not available (153 aa)
BN2166_0004490FGENESH: predicted gene_1.449 protein. (187 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0009130Restriction endonuclease type II-like protein. (332 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0032610Belongs to the cullin family. (803 aa)
BN2166_0040240BY PROTMAP: gi|342320419|gb|EGU12359.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1583 aa)
BN2166_0027320Von Willebrand factor type A domain-domain containing protein. (905 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0066250annotation not available (1102 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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