STRINGSTRING
BN2166_0028160 BN2166_0028160 BN2166_0047260 BN2166_0047260 BN2166_0060450 BN2166_0060450 BN2166_0061100 BN2166_0061100 BN2166_0036420 BN2166_0036420 BN2166_0062550 BN2166_0062550 BN2166_0054230 BN2166_0054230 BN2166_0051960 BN2166_0051960 BN2166_0065250 BN2166_0065250 BN2166_0007690 BN2166_0007690 BN2166_0008190 BN2166_0008190 BN2166_0008540 BN2166_0008540 BN2166_0002170 BN2166_0002170 BN2166_0001600 BN2166_0001600 BN2166_0048390 BN2166_0048390 BN2166_0008380 BN2166_0008380 BN2166_0009130 BN2166_0009130 BN2166_0010080 BN2166_0010080 BN2166_0012080 BN2166_0012080 BN2166_0014640 BN2166_0014640 BN2166_0014180 BN2166_0014180 BN2166_0016440 BN2166_0016440 BN2166_0016890 BN2166_0016890 BN2166_0026100 BN2166_0026100 BN2166_0014360 BN2166_0014360 BN2166_0019740 BN2166_0019740 BN2166_0017230 BN2166_0017230 BN2166_0020240 BN2166_0020240 BN2166_0017610 BN2166_0017610 BN2166_0022640 BN2166_0022640 BN2166_0031300 BN2166_0031300 BN2166_0020680 BN2166_0020680 BN2166_0023890 BN2166_0023890 BN2166_0024390 BN2166_0024390 BN2166_0033650 BN2166_0033650 BN2166_0022210 BN2166_0022210 BN2166_0024380 BN2166_0024380 BN2166_0011870 BN2166_0011870 BN2166_0039050 BN2166_0039050 BN2166_0027730 BN2166_0027730 BN2166_0033120 BN2166_0033120 BN2166_0030630 BN2166_0030630 BN2166_0030610 BN2166_0030610 BN2166_0018570 BN2166_0018570 BN2166_0031660 BN2166_0031660 BN2166_0032580 BN2166_0032580 BN2166_0032610 BN2166_0032610 BN2166_0039440 BN2166_0039440 BN2166_0058590 BN2166_0058590 BN2166_0066250 BN2166_0066250 BN2166_0066300 BN2166_0066300 BN2166_0061590 BN2166_0061590 BN2166_0071700 BN2166_0071700 BN2166_0067080 BN2166_0067080 BN2166_0005200 BN2166_0005200 BN2166_0002550 BN2166_0002550 BN2166_0002500 BN2166_0002500 BN2166_0002350 BN2166_0002350 BN2166_0000750 BN2166_0000750 BN2166_0046550 BN2166_0046550 BN2166_0043930 BN2166_0043930 BN2166_0029020 BN2166_0029020 BN2166_0053250 BN2166_0053250 BN2166_0046090 BN2166_0046090 BN2166_0075320 BN2166_0075320 BN2166_0075020 BN2166_0075020 BN2166_0074820 BN2166_0074820 BN2166_0068020 BN2166_0068020 BN2166_0075110 BN2166_0075110 BN2166_0074810 BN2166_0074810 BN2166_0074560 BN2166_0074560 BN2166_0072510 BN2166_0072510 BN2166_0070030 BN2166_0070030 BN2166_0067410 BN2166_0067410 BN2166_0054770 BN2166_0054770 BN2166_0040240 BN2166_0040240 BN2166_0023220 BN2166_0023220 BN2166_0038730 BN2166_0038730 BN2166_0050150 BN2166_0050150 BN2166_0027320 BN2166_0027320 BN2166_0026670 BN2166_0026670 BN2166_0008900 BN2166_0008900 BN2166_0000490 BN2166_0000490 BN2166_0001490 BN2166_0001490 BN2166_0003390 BN2166_0003390 BN2166_0003640 BN2166_0003640 BN2166_0000260 BN2166_0000260 BN2166_0000610 BN2166_0000610 BN2166_0004490 BN2166_0004490 BN2166_0005040 BN2166_0005040 BN2166_0014450 BN2166_0014450 BN2166_0042310 BN2166_0042310 BN2166_0045780 BN2166_0045780 BN2166_0057500 BN2166_0057500 BN2166_0046210 BN2166_0046210
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0028160Replication factor C subunit 4. (438 aa)
BN2166_0047260FGENESH: predicted gene_9.72 protein. (1762 aa)
BN2166_0060450annotation not available (1036 aa)
BN2166_0061100BY PROTMAP: gi|814543146|emb|CEQ39523.1| SPOSA6832_01050 [Sporidiobolus salmonicolor]. (389 aa)
BN2166_0036420Belongs to the peptidase C19 family. (1112 aa)
BN2166_0062550TFIIH subunit Tfb4/p34. (347 aa)
BN2166_0054230PCI domain-containing protein. (516 aa)
BN2166_0051960BY PROTMAP: gi|342319269|gb|EGU11219.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1144 aa)
BN2166_0065250Uncharacterized protein. (259 aa)
BN2166_0007690FGENESH: predicted gene_1.769 protein. (1389 aa)
BN2166_0008190annotation not available (1088 aa)
BN2166_0008540FGENESH: predicted gene_2.23 protein. (1833 aa)
BN2166_0002170DNA replication factor A subunit Ssb3. (108 aa)
BN2166_0001600Pre-mRNA-splicing factor ISY1. (308 aa)
BN2166_0048390FGENESH: predicted gene_9.185 protein. (101 aa)
BN2166_0008380Putative DNA polymerase. (210 aa)
BN2166_0009130Restriction endonuclease type II-like protein. (332 aa)
BN2166_0010080Uncharacterized protein. (459 aa)
BN2166_0012080BY PROTMAP: gi|647394756|emb|CDR35990.1| RHTO0S01e11694g1_1 [Rhodosporidium toruloides]. (1189 aa)
BN2166_0014640Belongs to the peptidase C19 family. (1536 aa)
BN2166_0014180annotation not available (1032 aa)
BN2166_0016440RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (496 aa)
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
BN2166_0026100Putative RFC3-DNA replication factor C, 40 kDa subunit. (357 aa)
BN2166_0014360BY PROTMAP: gi|647401247|emb|CDR47360.1| RHTO0S14e02542g1_1 [Rhodosporidium toruloides]. (348 aa)
BN2166_0019740Cyclin-like protein; Belongs to the cyclin family. (404 aa)
BN2166_0017230General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (451 aa)
BN2166_0020240annotation not available (633 aa)
BN2166_0017610FGENESH: predicted gene_3.212 protein. (1777 aa)
BN2166_0022640DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (123 aa)
BN2166_0031300Belongs to the actin family. (794 aa)
BN2166_0020680FGENESH: predicted gene_3.519 protein. (1459 aa)
BN2166_0023890annotation not available (374 aa)
BN2166_0024390FGENESH: predicted gene_4.215 protein. (2233 aa)
BN2166_0033650PCI domain-containing protein. (368 aa)
BN2166_0022210FGENESH: predicted gene_3.672 protein. (781 aa)
BN2166_0024380FGENESH: predicted gene_4.214 protein. (2249 aa)
BN2166_0011870annotation not available (1800 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0027730Putative DNA helicase INO80. (1591 aa)
BN2166_0033120BY PROTMAP: gi|647399978|emb|CDR45008.1| RHTO0S10e04126g1_1 [Rhodosporidium toruloides]. (210 aa)
BN2166_0030630Uncharacterized protein. (148 aa)
BN2166_0030610DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1254 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0031660DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1766 aa)
BN2166_0032580Replication factor C subunit 1. (887 aa)
BN2166_0032610Belongs to the cullin family. (803 aa)
BN2166_0039440annotation not available (268 aa)
BN2166_0058590BY PROTMAP: gi|647398513|emb|CDR42529.1| RHTO0S07e00518g1_1 [Rhodosporidium toruloides]. (562 aa)
BN2166_0066250annotation not available (1102 aa)
BN2166_0066300annotation not available (1334 aa)
BN2166_0061590BY PROTMAP: gi|472586134|gb|EMS23662.1| nucleus protein [Rhodosporidium toruloides NP11]. (198 aa)
BN2166_007170026S proteasome subunit RPN7-domain containing protein. (508 aa)
BN2166_0067080annotation not available (871 aa)
BN2166_0005200annotation not available (1304 aa)
BN2166_0002550HRDC-like protein. (105 aa)
BN2166_0002500BY PROTMAP: gi|342319348|gb|EGU11297.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (652 aa)
BN2166_0002350RNA-binding domain-containing protein. (139 aa)
BN2166_0000750Putative COP9 signalosome complex subunit 2. (480 aa)
BN2166_0046550RHTO0S21e02696g1_1. (177 aa)
BN2166_0043930BY PROTMAP: gi|342321555|gb|EGU13488.1| Hydrophilic protein [Rhodotorula glutinis ATCC 204091]. (370 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0053250annotation not available (389 aa)
BN2166_0046090Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (798 aa)
BN2166_0075320FGENESH: predicted gene_29.1 protein. (1456 aa)
BN2166_0075020FGENESH: predicted gene_24.1 protein. (390 aa)
BN2166_0074820FGENESH: predicted gene_20.5 protein. (1374 aa)
BN2166_0068020annotation not available (345 aa)
BN2166_0075110FGENESH: predicted gene_25.1 protein. (987 aa)
BN2166_0074810FGENESH: predicted gene_20.4 protein. (781 aa)
BN2166_0074560DNA-directed RNA polymerase II. (130 aa)
BN2166_0072510FGENESH: predicted gene_17.109 protein. (1594 aa)
BN2166_0070030annotation not available (1384 aa)
BN2166_0067410FGENESH: predicted gene_15.22 protein. (183 aa)
BN2166_0054770ERCC4 domain-containing protein. (1060 aa)
BN2166_0040240BY PROTMAP: gi|342320419|gb|EGU12359.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1583 aa)
BN2166_0023220Spliceosome complex protein. (1017 aa)
BN2166_0038730annotation not available (415 aa)
BN2166_0050150FGENESH: predicted gene_9.361 protein. (140 aa)
BN2166_0027320Von Willebrand factor type A domain-domain containing protein. (905 aa)
BN2166_0026670FGENESH: predicted gene_5.212 protein. (360 aa)
BN2166_0008900XPC-binding domain-domain containing protein. (403 aa)
BN2166_0000490annotation not available (138 aa)
BN2166_0001490FGENESH: predicted gene_1.149 protein. (316 aa)
BN2166_0003390annotation not available (153 aa)
BN2166_0003640annotation not available (731 aa)
BN2166_0000260RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (467 aa)
BN2166_0000610Peptidyl-prolyl cis-trans isomerase. (374 aa)
BN2166_0004490FGENESH: predicted gene_1.449 protein. (187 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0014450FGENESH: predicted gene_2.614 protein. (372 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0045780annotation not available (410 aa)
BN2166_0057500PCI domain-containing protein. (1445 aa)
BN2166_0046210Belongs to the protein kinase superfamily. (354 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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