STRINGSTRING
BN2166_0003390 BN2166_0003390 BN2166_0005040 BN2166_0005040 BN2166_0014950 BN2166_0014950 BN2166_0004930 BN2166_0004930 BN2166_0018610 BN2166_0018610 BN2166_0022560 BN2166_0022560 BN2166_0035600 BN2166_0035600 BN2166_0026630 BN2166_0026630 BN2166_0039050 BN2166_0039050 BN2166_0028330 BN2166_0028330 BN2166_0015970 BN2166_0015970 BN2166_0031130 BN2166_0031130 BN2166_0018570 BN2166_0018570 BN2166_0047400 BN2166_0047400 BN2166_0022570 BN2166_0022570 BN2166_0036510 BN2166_0036510 BN2166_0052350 BN2166_0052350 BN2166_0029020 BN2166_0029020 BN2166_0042310 BN2166_0042310 BN2166_0050590 BN2166_0050590 BN2166_0033270 BN2166_0033270 BN2166_0059000 BN2166_0059000 BN2166_0051630 BN2166_0051630 BN2166_0057990 BN2166_0057990 MDM34 MDM34 BN2166_0059430 BN2166_0059430 BN2166_0057110 BN2166_0057110 BN2166_0060380 BN2166_0060380 BN2166_0065610 BN2166_0065610 BN2166_0070430 BN2166_0070430 BN2166_0059120 BN2166_0059120 BN2166_0064520 BN2166_0064520 BN2166_0065470 BN2166_0065470
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0003390annotation not available (153 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0014950annotation not available (283 aa)
BN2166_0004930Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (173 aa)
BN2166_0018610annotation not available (709 aa)
BN2166_0022560BY PROTMAP: gi|814539372|emb|CEQ43229.1| SPOSA6832_05140 [Sporidiobolus salmonicolor]. (726 aa)
BN2166_0035600DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1012 aa)
BN2166_0026630annotation not available (351 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0028330FGENESH: predicted gene_5.378 protein. (732 aa)
BN2166_0015970DUF1767 domain-containing protein. (430 aa)
BN2166_0031130Uncharacterized protein. (294 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0047400annotation not available (893 aa)
BN2166_0022570FGENESH: predicted gene_4.33 protein. (310 aa)
BN2166_0036510annotation not available (1160 aa)
BN2166_0052350Uncharacterized protein. (690 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0050590BY PROTMAP: gi|647403136|emb|CDR49294.1| RHTO0S25e00650g1_1 [Rhodosporidium toruloides]; Belongs to the PI3/PI4-kinase family. (2634 aa)
BN2166_0033270annotation not available (424 aa)
BN2166_0059000Belongs to the protein kinase superfamily. (365 aa)
BN2166_0051630annotation not available (971 aa)
BN2166_0057990Putative Serine/threonine protein kinase FSK. (750 aa)
MDM34Mitochondrial distribution and morphology protein 34; Component of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum (ER) and mitochondria. Components of this complex are involved in the control of mitochondrial shape and protein biogenesis, and function in nonvesicular lipid trafficking between the ER and mitochondria. MDM34 is required for the interaction of the ER-resident membrane protein MMM1 and the outer mitochondrial membrane-resident beta-barrel protein MDM10. (794 aa)
BN2166_0059430annotation not available (762 aa)
BN2166_0057110Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (439 aa)
BN2166_0060380BY PROTMAP: gi|472586258|gb|EMS23786.1| 3'-5' exonuclease [Rhodosporidium toruloides NP11]. (335 aa)
BN2166_0065610FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (586 aa)
BN2166_0070430Protein kinase-like domain-containing protein. (533 aa)
BN2166_0059120Belongs to the protein kinase superfamily. (348 aa)
BN2166_0064520BY PROTMAP: gi|472585507|gb|EMS23058.1| bloom syndrome protein [Rhodosporidium toruloides NP11]. (1529 aa)
BN2166_0065470BY PROTMAP: gi|342319021|gb|EGU10973.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1208 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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