STRINGSTRING
BN2166_0002170 BN2166_0002170 BN2166_0046640 BN2166_0046640 BN2166_0000150 BN2166_0000150 BN2166_0002500 BN2166_0002500 BN2166_0007500 BN2166_0007500 BN2166_0003390 BN2166_0003390 BN2166_0005040 BN2166_0005040 BN2166_0002260 BN2166_0002260 BN2166_0002460 BN2166_0002460 BN2166_0004410 BN2166_0004410 BN2166_0008190 BN2166_0008190 BN2166_0008540 BN2166_0008540 BN2166_0010040 BN2166_0010040 BN2166_0008380 BN2166_0008380 BN2166_0019600 BN2166_0019600 BN2166_0009780 BN2166_0009780 BN2166_0010080 BN2166_0010080 BN2166_0023950 BN2166_0023950 BN2166_0027950 BN2166_0027950 BN2166_0019740 BN2166_0019740 BN2166_0017610 BN2166_0017610 BN2166_0020680 BN2166_0020680 BN2166_0023890 BN2166_0023890 BN2166_0024390 BN2166_0024390 BN2166_0022210 BN2166_0022210 BN2166_0024380 BN2166_0024380 BN2166_0024960 BN2166_0024960 BN2166_0039050 BN2166_0039050 BN2166_0040250 BN2166_0040250 BN2166_0030630 BN2166_0030630 BN2166_0018570 BN2166_0018570 BN2166_0037140 BN2166_0037140 BN2166_0037190 BN2166_0037190 BN2166_0038290 BN2166_0038290 BN2166_0039440 BN2166_0039440 BN2166_0040040 BN2166_0040040 BN2166_0037180 BN2166_0037180 BN2166_0038110 BN2166_0038110 BN2166_0050300 BN2166_0050300 BN2166_0029020 BN2166_0029020 BN2166_0053950 BN2166_0053950 BN2166_0042310 BN2166_0042310 BN2166_0044580 BN2166_0044580 BN2166_0045430 BN2166_0045430 BN2166_0031070 BN2166_0031070 BN2166_0044760 BN2166_0044760 BN2166_0046210 BN2166_0046210 BN2166_0033070 BN2166_0033070 BN2166_0051940 BN2166_0051940 BN2166_0047260 BN2166_0047260 BN2166_0061100 BN2166_0061100 BN2166_0052830 BN2166_0052830 BN2166_0053080 BN2166_0053080 BN2166_0052260 BN2166_0052260 BN2166_0066300 BN2166_0066300 BN2166_0065240 BN2166_0065240 BN2166_0062530 BN2166_0062530 BN2166_0070030 BN2166_0070030 BN2166_0070730 BN2166_0070730 BN2166_0074240 BN2166_0074240 BN2166_0069410 BN2166_0069410 BN2166_0057520 BN2166_0057520 BN2166_0072510 BN2166_0072510 BN2166_0074060 BN2166_0074060 BN2166_0074810 BN2166_0074810 BN2166_0075110 BN2166_0075110 BN2166_0074820 BN2166_0074820 BN2166_0075020 BN2166_0075020 BN2166_0075320 BN2166_0075320
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0002170DNA replication factor A subunit Ssb3. (108 aa)
BN2166_0046640Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (90 aa)
BN2166_0000150DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (599 aa)
BN2166_0002500BY PROTMAP: gi|342319348|gb|EGU11297.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (652 aa)
BN2166_0007500CDC45 family. (736 aa)
BN2166_0003390annotation not available (153 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0002260DNA polymerase. (1555 aa)
BN2166_0002460BY PROTMAP: gi|814541099|emb|CEQ41539.1| SPOSA6832_03267 [Sporidiobolus salmonicolor]; Belongs to the cyclin family. (517 aa)
BN2166_0004410Origin recognition complex (ORC) subunit 5 C-terminus-domain containing protein. (703 aa)
BN2166_0008190annotation not available (1088 aa)
BN2166_0008540FGENESH: predicted gene_2.23 protein. (1833 aa)
BN2166_0010040DNA helicase; Belongs to the MCM family. (2462 aa)
BN2166_0008380Putative DNA polymerase. (210 aa)
BN2166_0019600Dfp1/Him1, central region-domain containing protein. (719 aa)
BN2166_0009780BY PROTMAP: gi|342319889|gb|EGU11834.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (274 aa)
BN2166_0010080Uncharacterized protein. (459 aa)
BN2166_0023950DNA helicase; Belongs to the MCM family. (1074 aa)
BN2166_0027950annotation not available (813 aa)
BN2166_0019740Cyclin-like protein; Belongs to the cyclin family. (404 aa)
BN2166_0017610FGENESH: predicted gene_3.212 protein. (1777 aa)
BN2166_0020680FGENESH: predicted gene_3.519 protein. (1459 aa)
BN2166_0023890annotation not available (374 aa)
BN2166_0024390FGENESH: predicted gene_4.215 protein. (2233 aa)
BN2166_0022210FGENESH: predicted gene_3.672 protein. (781 aa)
BN2166_0024380FGENESH: predicted gene_4.214 protein. (2249 aa)
BN2166_0024960Uncharacterized protein. (735 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0040250Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (106 aa)
BN2166_0030630Uncharacterized protein. (148 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0037140Origin recognition complex (ORC) subunit 3 N-terminus-domain containing protein. (725 aa)
BN2166_0037190Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (708 aa)
BN2166_0038290DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (773 aa)
BN2166_0039440annotation not available (268 aa)
BN2166_0040040annotation not available (718 aa)
BN2166_0037180Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (924 aa)
BN2166_0038110annotation not available (926 aa)
BN2166_0050300DNA replication origin binding protein. (539 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0053950DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (585 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0044580DNA helicase; Belongs to the MCM family. (939 aa)
BN2166_0045430Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily. (328 aa)
BN2166_0031070P-loop containing nucleoside triphosphate hydrolase protein. (687 aa)
BN2166_0044760Protein kinase-like domain-containing protein. (671 aa)
BN2166_0046210Belongs to the protein kinase superfamily. (354 aa)
BN2166_0033070annotation not available (266 aa)
BN2166_0051940DNA_pol_B_exo1 domain-containing protein. (224 aa)
BN2166_0047260FGENESH: predicted gene_9.72 protein. (1762 aa)
BN2166_0061100BY PROTMAP: gi|814543146|emb|CEQ39523.1| SPOSA6832_01050 [Sporidiobolus salmonicolor]. (389 aa)
BN2166_0052830DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2246 aa)
BN2166_0053080DNA helicase; Belongs to the MCM family. (880 aa)
BN2166_0052260Belongs to the cyclin family. (651 aa)
BN2166_0066300annotation not available (1334 aa)
BN2166_0065240Belongs to the cyclin family. (606 aa)
BN2166_0062530annotation not available (835 aa)
BN2166_0070030annotation not available (1384 aa)
BN2166_0070730FGENESH: predicted gene_16.99 protein. (810 aa)
BN2166_0074240BY PROTMAP: gi|647401048|emb|CDR46990.1| RHTO0S13e04478g1_1 [Rhodosporidium toruloides]; Belongs to the protein kinase superfamily. (294 aa)
BN2166_0069410FGENESH: predicted gene_15.222 protein. (950 aa)
BN2166_0057520DNA helicase; Belongs to the MCM family. (731 aa)
BN2166_0072510FGENESH: predicted gene_17.109 protein. (1594 aa)
BN2166_0074060DNA primase; Belongs to the eukaryotic-type primase small subunit family. (452 aa)
BN2166_0074810FGENESH: predicted gene_20.4 protein. (781 aa)
BN2166_0075110FGENESH: predicted gene_25.1 protein. (987 aa)
BN2166_0074820FGENESH: predicted gene_20.5 protein. (1374 aa)
BN2166_0075020FGENESH: predicted gene_24.1 protein. (390 aa)
BN2166_0075320FGENESH: predicted gene_29.1 protein. (1456 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.