36 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0033640	FGENESH: predicted gene_6.286 protein. (209 aa)
	BN2166_0006030	Serine/threonine-protein phosphatase. (306 aa)
	BN2166_0048390	FGENESH: predicted gene_9.185 protein. (101 aa)
	BN2166_0004500	annotation not available (691 aa)
	BN2166_0009250	Pkinase-domain-containing protein. (429 aa)
	BN2166_0010000	annotation not available (493 aa)
	BN2166_0010750	Uncharacterized protein. (927 aa)
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0001960	Putative carotenoid oxygenase. (636 aa)
	BN2166_0008690	Spindle pole body component. (786 aa)
	BN2166_0009680	BY PROTMAP: gi\|342319886\|gb\|EGU11831.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1301 aa)
	BN2166_0010480	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (512 aa)
	BN2166_0011930	BY PROTMAP: gi\|647394773\|emb\|CDR36007.1\| RHTO0S01e12134g1_1 [Rhodosporidium toruloides]. (607 aa)
	BN2166_0014540	BY PROTMAP: gi\|647401265\|emb\|CDR47393.1\| RHTO0S14e02982g1_1 [Rhodosporidium toruloides]. (287 aa)
	BN2166_0021680	BY PROTMAP: gi\|342321674\|gb\|EGU13606.1\| Wee1 [Rhodotorula glutinis ATCC 204091]. (1790 aa)
	BN2166_0023380	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (505 aa)
	BN2166_0013120	WD40-repeat-containing domain protein. (856 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0019470	annotation not available (650 aa)
	BN2166_0048450	FGENESH: predicted gene_9.191 protein. (773 aa)
	BN2166_0041190	annotation not available (2526 aa)
	BN2166_0038110	annotation not available (926 aa)
	BN2166_0028720	Uncharacterized protein. (1098 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0042410	FGENESH: predicted gene_8.96 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1384 aa)
	BN2166_0056990	Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated. (433 aa)
	BN2166_0052310	FGENESH: predicted gene_10.68 protein. (1880 aa)
	BN2166_0059540	annotation not available (490 aa)
	BN2166_0056310	BY PROTMAP: gi\|342320193\|gb\|EGU12135.1\| Other/AUR protein kinase [Rhodotorula glutinis ATCC 204091]. (504 aa)
	BN2166_0048420	Uncharacterized protein. (498 aa)
	BN2166_0067210	annotation not available (1194 aa)
	BN2166_0069410	FGENESH: predicted gene_15.222 protein. (950 aa)
	BN2166_0073430	FGENESH: predicted gene_17.201 protein. (696 aa)
	BN2166_0069820	Uncharacterized protein. (1120 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0001960	BN2166_0010000	A0A0K3C7B4	A0A0K3C611	Putative carotenoid oxygenase.	annotation not available	0.465
BN2166_0003390	BN2166_0006030	A0A0K3C6J0	A0A061AM61	annotation not available	Serine/threonine-protein phosphatase.	0.658
BN2166_0003390	BN2166_0009680	A0A0K3C6J0	A0A0K3C8X8	annotation not available	BY PROTMAP: gi\|342319886\|gb\|EGU11831.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].	0.485
BN2166_0003390	BN2166_0010000	A0A0K3C6J0	A0A0K3C611	annotation not available	annotation not available	0.684
BN2166_0003390	BN2166_0010480	A0A0K3C6J0	A0A0K3C971	annotation not available	Protein phosphatase PP2A regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.	0.645
BN2166_0003390	BN2166_0010750	A0A0K3C6J0	A0A0K3C6A6	annotation not available	Uncharacterized protein.	0.728
BN2166_0003390	BN2166_0011930	A0A0K3C6J0	A0A0K3C9M3	annotation not available	BY PROTMAP: gi\|647394773\|emb\|CDR36007.1\| RHTO0S01e12134g1_1 [Rhodosporidium toruloides].	0.638
BN2166_0003390	BN2166_0013120	A0A0K3C6J0	A0A0K3CE46	annotation not available	WD40-repeat-containing domain protein.	0.781
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0019470	A0A0K3C6J0	A0A0K3CFV8	annotation not available	annotation not available	0.641
BN2166_0003390	BN2166_0028720	A0A0K3C6J0	A0A0K3CIG2	annotation not available	Uncharacterized protein.	0.485
BN2166_0003390	BN2166_0029020	A0A0K3C6J0	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.938
BN2166_0003390	BN2166_0038110	A0A0K3C6J0	A0A0K3CHD7	annotation not available	annotation not available	0.637
BN2166_0003390	BN2166_0042310	A0A0K3C6J0	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.937
BN2166_0003390	BN2166_0048390	A0A0K3C6J0	A0A061AXA9	annotation not available	FGENESH: predicted gene_9.185 protein.	0.947
BN2166_0003390	BN2166_0048420	A0A0K3C6J0	A0A0K3CP67	annotation not available	Uncharacterized protein.	0.485
BN2166_0003390	BN2166_0048450	A0A0K3C6J0	A0A0K3CGZ2	annotation not available	FGENESH: predicted gene_9.191 protein.	0.485
BN2166_0003390	BN2166_0056310	A0A0K3C6J0	A0A0K3CMU6	annotation not available	BY PROTMAP: gi\|342320193\|gb\|EGU12135.1\| Other/AUR protein kinase [Rhodotorula glutinis ATCC 204091].	0.672
BN2166_0003390	BN2166_0067210	A0A0K3C6J0	A0A0K3CQX1	annotation not available	annotation not available	0.485
BN2166_0003390	BN2166_0069410	A0A0K3C6J0	A0A0K3CRG0	annotation not available	FGENESH: predicted gene_15.222 protein.	0.584

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