STRINGSTRING
BN2166_0007960 BN2166_0007960 BN2166_0063130 BN2166_0063130 BN2166_0050110 BN2166_0050110 BN2166_0034270 BN2166_0034270 BN2166_0042310 BN2166_0042310 BN2166_0029020 BN2166_0029020 BN2166_0026320 BN2166_0026320 BN2166_0000900 BN2166_0000900 BN2166_0003390 BN2166_0003390 BN2166_0038930 BN2166_0038930 BN2166_0045250 BN2166_0045250 BN2166_0018570 BN2166_0018570 BN2166_0026330 BN2166_0026330 BN2166_0005040 BN2166_0005040
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0007960AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
BN2166_0063130AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (709 aa)
BN2166_0050110Uncharacterized protein; Belongs to the peptidase S8 family. (672 aa)
BN2166_0034270AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (732 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0026320Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1662 aa)
BN2166_0000900Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (273 aa)
BN2166_0003390annotation not available (153 aa)
BN2166_0038930BY PROTMAP: gi|814542916|emb|CEQ39947.1| SPOSA6832_01515, partial [Sporidiobolus salmonicolor]; Belongs to the adaptor complexes medium subunit family. (478 aa)
BN2166_0045250AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (978 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0026330FGENESH: predicted gene_5.178 protein. (235 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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