STRINGSTRING
BN2166_0042310 BN2166_0042310 BN2166_0009970 BN2166_0009970 BN2166_0002750 BN2166_0002750 BN2166_0011250 BN2166_0011250 BN2166_0003390 BN2166_0003390 BN2166_0005040 BN2166_0005040 BN2166_0010510 BN2166_0010510 BN2166_0018080 BN2166_0018080 BN2166_0018380 BN2166_0018380 BN2166_0018210 BN2166_0018210 BN2166_0010470 BN2166_0010470 BN2166_0030490 BN2166_0030490 BN2166_0029560 BN2166_0029560 BN2166_0018570 BN2166_0018570 BN2166_0035360 BN2166_0035360 BN2166_0027170 BN2166_0027170 BN2166_0029020 BN2166_0029020 BN2166_0062020 BN2166_0062020
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0009970Histone H2B; Belongs to the histone H2B family. (144 aa)
BN2166_0002750BY PROTMAP: gi|342319357|gb|EGU11306.1| DNA repair protein rad5 [Rhodotorula glutinis ATCC 204091]. (918 aa)
BN2166_0011250SNF2 family N-terminal domain-domain containing protein. (1158 aa)
BN2166_0003390annotation not available (153 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0010510Pol II transcription elongation factor. (587 aa)
BN2166_0018080Histone H2B; Belongs to the histone H2B family. (138 aa)
BN2166_0018380BY PROTMAP: gi|342319877|gb|EGU11822.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1278 aa)
BN2166_0018210Histone H2B; Belongs to the histone H2B family. (125 aa)
BN2166_0010470FGENESH: predicted gene_2.216 protein. (712 aa)
BN2166_0030490Protein YIP. (262 aa)
BN2166_0029560annotation not available (1487 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0035360SNF2 family N-terminal domain-domain containing protein. (1010 aa)
BN2166_0027170SNF2 family N-terminal domain-domain containing protein. (1221 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0062020BY PROTMAP: gi|342319449|gb|EGU11397.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (1859 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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