(37 nodes) RAB GEFs exchange GTP for GDP on RABs network (Rhodotorula toruloides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

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co-expression

protein homology

Your Input:
	BN2166_0031930	GTP-binding protein, SEC4. (215 aa)
	BN2166_0036980	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (139 aa)
	BN2166_0007350	Uncharacterized protein. (746 aa)
	BN2166_0001130	BY PROTMAP: gi\|472586022\|gb\|EMS23564.1\| endoribonuclease Dicer [Rhodosporidium toruloides NP11]; Belongs to the helicase family. Dicer subfamily. (1384 aa)
	BN2166_0012150	annotation not available (1506 aa)
	BN2166_0011990	DUF500-domain containing protein. (600 aa)
	BN2166_0008110	DUF500-domain containing protein. (296 aa)
	BN2166_0022600	Putative GTP-binding protein ypt1. (205 aa)
	BN2166_0015660	annotation not available (796 aa)
	BN2166_0019490	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (203 aa)
	BN2166_0003270	annotation not available (522 aa)
	BN2166_0020530	Transport protein particle complex subunit. (1432 aa)
	BN2166_0024160	Uncharacterized protein. (621 aa)
	BN2166_0037050	Uncharacterized protein. (754 aa)
	BN2166_0015670	FGENESH: predicted gene_3.18 protein. (105 aa)
	BN2166_0032030	annotation not available (1107 aa)
	BN2166_0032130	BY PROTMAP: gi\|595441971\|gb\|EXX54114.1\| Ypt7p [Rhizophagus irregularis DAOM 197198w]. (183 aa)
	BN2166_0032360	BY PROTMAP: gi\|342319630\|gb\|EGU11577.1\| Small Rab GTPase Rab7a [Rhodotorula glutinis ATCC 204091]. (447 aa)
	BN2166_0037040	Ras family-domain containing protein. (296 aa)
	BN2166_0034110	annotation not available (204 aa)
	BN2166_0034630	BY PROTMAP: gi\|472586455\|gb\|EMS23983.1\| endoribonuclease Dicer [Rhodosporidium toruloides NP11]; Belongs to the helicase family. Dicer subfamily. (2056 aa)
	BN2166_0034460	annotation not available (852 aa)
	BN2166_0045090	BY PROTMAP: gi\|647395296\|emb\|CDR36603.1\| RHTO0S02e04346g1_1 [Rhodosporidium toruloides]. (1215 aa)
	BN2166_0029070	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (452 aa)
	BN2166_0045280	Trafficking protein particle complex subunit BET3. (200 aa)
	BN2166_0031320	Transport protein particle (TRAPP) component-domain containing protein. (288 aa)
	BN2166_0033420	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily. (253 aa)
	BN2166_0050430	Foie gras liver health family 1-domain containing protein. (1261 aa)
	BN2166_0051510	GDP dissociation inhibitor-domain containing protein. (595 aa)
	BN2166_0056980	Uncharacterized protein. (1167 aa)
	BN2166_0060440	P-loop containing nucleoside triphosphate hydrolase protein. (253 aa)
	BN2166_0063830	annotation not available (1545 aa)
	BN2166_0064280	BY PROTMAP: gi\|342319548\|gb\|EGU11496.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (875 aa)
	BN2166_0074000	annotation not available (364 aa)
	BN2166_0073940	annotation not available (866 aa)
	BN2166_0060820	Trafficking protein particle complex 2. (156 aa)
	BN2166_0072970	SH3 domain-containing protein. (659 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0001130	BN2166_0045090	A0A0K3C6H4	A0A0K3CI53	BY PROTMAP: gi\|472586022\|gb\|EMS23564.1\| endoribonuclease Dicer [Rhodosporidium toruloides NP11]; Belongs to the helicase family. Dicer subfamily.	BY PROTMAP: gi\|647395296\|emb\|CDR36603.1\| RHTO0S02e04346g1_1 [Rhodosporidium toruloides].	0.721
BN2166_0003270	BN2166_0012150	A0A0K3CBE9	A0A0K3C6R0	annotation not available	annotation not available	0.970
BN2166_0003270	BN2166_0019490	A0A0K3CBE9	A0A0K3CB19	annotation not available	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.951
BN2166_0003270	BN2166_0020530	A0A0K3CBE9	A0A0K3CC45	annotation not available	Transport protein particle complex subunit.	0.904
BN2166_0003270	BN2166_0022600	A0A0K3CBE9	A0A0K3C9H7	annotation not available	Putative GTP-binding protein ypt1.	0.749
BN2166_0003270	BN2166_0024160	A0A0K3CBE9	A0A0K3CDD3	annotation not available	Uncharacterized protein.	0.960
BN2166_0003270	BN2166_0031320	A0A0K3CBE9	A0A0K3CJD0	annotation not available	Transport protein particle (TRAPP) component-domain containing protein.	0.930
BN2166_0003270	BN2166_0033420	A0A0K3CBE9	A0A0K3CJV5	annotation not available	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. BET3 subfamily.	0.942
BN2166_0003270	BN2166_0034110	A0A0K3CBE9	A0A0K3CG99	annotation not available	annotation not available	0.925
BN2166_0003270	BN2166_0036980	A0A0K3CBE9	A0A061AZR4	annotation not available	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.	0.940
BN2166_0003270	BN2166_0045280	A0A0K3CBE9	A0A0K3CJ38	annotation not available	Trafficking protein particle complex subunit BET3.	0.948
BN2166_0003270	BN2166_0050430	A0A0K3CBE9	A0A0K3CKG3	annotation not available	Foie gras liver health family 1-domain containing protein.	0.978
BN2166_0003270	BN2166_0056980	A0A0K3CBE9	A0A0K3CMA8	annotation not available	Uncharacterized protein.	0.879
BN2166_0003270	BN2166_0060820	A0A0K3CBE9	A0A0K3CSQ1	annotation not available	Trafficking protein particle complex 2.	0.953
BN2166_0007350	BN2166_0029070	A0A0K3C5D7	A0A0K3CII9	Uncharacterized protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.824
BN2166_0007350	BN2166_0031930	A0A0K3C5D7	A0A061BBH9	Uncharacterized protein.	GTP-binding protein, SEC4.	0.813
BN2166_0007350	BN2166_0032130	A0A0K3C5D7	A0A0K3CFL6	Uncharacterized protein.	BY PROTMAP: gi\|595441971\|gb\|EXX54114.1\| Ypt7p [Rhizophagus irregularis DAOM 197198w].	0.954
BN2166_0007350	BN2166_0032360	A0A0K3C5D7	A0A0K3CFT7	Uncharacterized protein.	BY PROTMAP: gi\|342319630\|gb\|EGU11577.1\| Small Rab GTPase Rab7a [Rhodotorula glutinis ATCC 204091].	0.942
BN2166_0007350	BN2166_0037050	A0A0K3C5D7	A0A0K3CDP9	Uncharacterized protein.	Uncharacterized protein.	0.813
BN2166_0007350	BN2166_0063830	A0A0K3C5D7	A0A0K3CP93	Uncharacterized protein.	annotation not available	0.996

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