STRINGSTRING
BN2166_0019630 BN2166_0019630 BN2166_0019210 BN2166_0019210 BN2166_0026380 BN2166_0026380 BN2166_0030910 BN2166_0030910 BN2166_0018570 BN2166_0018570 BN2166_0019320 BN2166_0019320 BN2166_0019620 BN2166_0019620 BN2166_0020320 BN2166_0020320 BN2166_0029020 BN2166_0029020 BN2166_0042310 BN2166_0042310 BN2166_0044560 BN2166_0044560 BN2166_0055710 BN2166_0055710 BN2166_0044570 BN2166_0044570 BN2166_0054520 BN2166_0054520 BN2166_0074610 BN2166_0074610 BN2166_0068920 BN2166_0068920 BN2166_0016880 BN2166_0016880 BN2166_0022150 BN2166_0022150 BN2166_0009630 BN2166_0009630 BN2166_0019100 BN2166_0019100 BN2166_0005040 BN2166_0005040 BN2166_0003390 BN2166_0003390
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0019630FGENESH: predicted gene_3.414 protein. (482 aa)
BN2166_0019210BY PROTMAP: gi|342320098|gb|EGU12041.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (480 aa)
BN2166_0026380FGENESH: predicted gene_5.183 protein; Belongs to the small GTPase superfamily. Arf family. (236 aa)
BN2166_0030910Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (461 aa)
BN2166_0018570Uncharacterized protein. (230 aa)
BN2166_0019320BY PROTMAP: gi|342320101|gb|EGU12044.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (756 aa)
BN2166_0019620Uncharacterized protein. (552 aa)
BN2166_0020320FGENESH: predicted gene_3.483 protein. (432 aa)
BN2166_0029020Ubiquitin-related domain-containing protein. (154 aa)
BN2166_0042310FGENESH: predicted gene_8.86 protein. (1243 aa)
BN2166_0044560BY PROTMAP: gi|342321529|gb|EGU13462.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (415 aa)
BN2166_0055710FGENESH: predicted gene_11.67 protein. (495 aa)
BN2166_0044570BY PROTMAP: gi|342321528|gb|EGU13461.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (371 aa)
BN2166_0054520Acyl-protein thioesterase 1. (229 aa)
BN2166_0074610BY PROTMAP: gi|647401091|emb|CDR47060.1| RHTO0S13e05446g1_1 [Rhodosporidium toruloides]. (336 aa)
BN2166_0068920Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (538 aa)
BN2166_0016880FGENESH: predicted gene_3.139 protein. (274 aa)
BN2166_0022150Phospholipase/Carboxylesterase-domain containing protein. (288 aa)
BN2166_0009630annotation not available (367 aa)
BN2166_0019100annotation not available (460 aa)
BN2166_0005040Uncharacterized protein. (150 aa)
BN2166_0003390annotation not available (153 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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