20 items (Rhodotorula toruloides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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Others

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Your Input:
	BN2166_0048390	FGENESH: predicted gene_9.185 protein. (101 aa)
	BN2166_0009200	annotation not available (600 aa)
	BN2166_0003390	annotation not available (153 aa)
	BN2166_0005040	Uncharacterized protein. (150 aa)
	BN2166_0009410	FGENESH: predicted gene_2.110 protein. (325 aa)
	BN2166_0015460	Peroxiredoxin. (225 aa)
	BN2166_0027750	Sulfiredoxin. (160 aa)
	BN2166_0005620	P-loop containing nucleoside triphosphate hydrolase protein. (841 aa)
	BN2166_0024960	Uncharacterized protein. (735 aa)
	BN2166_0027880	NPL4 family-domain containing protein. (745 aa)
	BN2166_0018570	Uncharacterized protein. (230 aa)
	BN2166_0029020	Ubiquitin-related domain-containing protein. (154 aa)
	BN2166_0042310	FGENESH: predicted gene_8.86 protein. (1243 aa)
	BN2166_0031670	BY PROTMAP: gi\|342319608\|gb\|EGU11555.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (694 aa)
	BN2166_0033070	annotation not available (266 aa)
	BN2166_0048030	Valosin-containing protein; Belongs to the AAA ATPase family. (823 aa)
	BN2166_0037770	FGENESH: predicted gene_7.162 protein. (539 aa)
	BN2166_0070730	FGENESH: predicted gene_16.99 protein. (810 aa)
	BN2166_0074490	BY PROTMAP: gi\|472584786\|gb\|EMS22361.1\| dipeptidyl-peptidase III [Rhodosporidium toruloides NP11]. (790 aa)
	BN2166_0073480	annotation not available (846 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0003390	BN2166_0005620	A0A0K3C6J0	A0A0K3CC16	annotation not available	P-loop containing nucleoside triphosphate hydrolase protein.	0.862
BN2166_0003390	BN2166_0009200	A0A0K3C6J0	A0A0K3C5S2	annotation not available	annotation not available	0.712
BN2166_0003390	BN2166_0009410	A0A0K3C6J0	A0A0K3C986	annotation not available	FGENESH: predicted gene_2.110 protein.	0.712
BN2166_0003390	BN2166_0018570	A0A0K3C6J0	A0A0K3CFL1	annotation not available	Uncharacterized protein.	0.982
BN2166_0003390	BN2166_0024960	A0A0K3C6J0	A0A0K3CDK6	annotation not available	Uncharacterized protein.	0.882
BN2166_0003390	BN2166_0027880	A0A0K3C6J0	A0A0K3CED4	annotation not available	NPL4 family-domain containing protein.	0.966
BN2166_0003390	BN2166_0029020	A0A0K3C6J0	A0A0K3CII4	annotation not available	Ubiquitin-related domain-containing protein.	0.938
BN2166_0003390	BN2166_0031670	A0A0K3C6J0	A0A0K3CJE9	annotation not available	BY PROTMAP: gi\|342319608\|gb\|EGU11555.1\| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].	0.867
BN2166_0003390	BN2166_0033070	A0A0K3C6J0	A0A0K3CJT6	annotation not available	annotation not available	0.626
BN2166_0003390	BN2166_0037770	A0A0K3C6J0	A0A0K3CL34	annotation not available	FGENESH: predicted gene_7.162 protein.	0.942
BN2166_0003390	BN2166_0042310	A0A0K3C6J0	A0A0K3CIR4	annotation not available	FGENESH: predicted gene_8.86 protein.	0.937
BN2166_0003390	BN2166_0048030	A0A0K3C6J0	A0A0K3CJW1	annotation not available	Valosin-containing protein; Belongs to the AAA ATPase family.	0.935
BN2166_0003390	BN2166_0048390	A0A0K3C6J0	A0A061AXA9	annotation not available	FGENESH: predicted gene_9.185 protein.	0.947
BN2166_0003390	BN2166_0070730	A0A0K3C6J0	A0A0K3CR82	annotation not available	FGENESH: predicted gene_16.99 protein.	0.859
BN2166_0003390	BN2166_0073480	A0A0K3C6J0	A0A0K3CRX6	annotation not available	annotation not available	0.712
BN2166_0005040	BN2166_0005620	A0A0K3C739	A0A0K3CC16	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.712
BN2166_0005040	BN2166_0009200	A0A0K3C739	A0A0K3C5S2	Uncharacterized protein.	annotation not available	0.712
BN2166_0005040	BN2166_0009410	A0A0K3C739	A0A0K3C986	Uncharacterized protein.	FGENESH: predicted gene_2.110 protein.	0.712
BN2166_0005040	BN2166_0018570	A0A0K3C739	A0A0K3CFL1	Uncharacterized protein.	Uncharacterized protein.	0.773
BN2166_0005040	BN2166_0024960	A0A0K3C739	A0A0K3CDK6	Uncharacterized protein.	Uncharacterized protein.	0.882

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