(32 nodes) Other types of O-glycan biosynthesis network (Rhodotorula toruloides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0007750	FGENESH: predicted gene_1.775 protein. (513 aa)
	BN2166_0008050	FGENESH: predicted gene_1.805 protein. (562 aa)
	BN2166_0001880	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (1226 aa)
	BN2166_0013300	annotation not available (522 aa)
	BN2166_0003880	annotation not available (578 aa)
	BN2166_0003510	BY PROTMAP: gi\|647396988\|emb\|CDR39755.1\| RHTO0S04e08746g1_1 [Rhodosporidium toruloides]. (1012 aa)
	BN2166_0008040	annotation not available (527 aa)
	BN2166_0007880	annotation not available (261 aa)
	BN2166_0010230	FGENESH: predicted gene_2.192 protein. (806 aa)
	BN2166_0012380	FGENESH: predicted gene_2.407 protein. (364 aa)
	BN2166_0015640	Uncharacterized protein. (477 aa)
	BN2166_0025240	annotation not available (818 aa)
	BN2166_0034300	Capsular associated protein. (755 aa)
	BN2166_0024580	BY PROTMAP: gi\|647395809\|emb\|CDR37525.1\| RHTO0S02e15984g1_1 [Rhodosporidium toruloides]. (1122 aa)
	BN2166_0040390	annotation not available (483 aa)
	BN2166_0051000	TPR domain-containing protein. (2015 aa)
	BN2166_0041230	Putative mannosyltransferase. (410 aa)
	BN2166_0039960	Glycosyltransferase-like protein. (595 aa)
	BN2166_0046890	Glycosyltransferase family 90 protein. (696 aa)
	BN2166_0034670	Uncharacterized protein. (583 aa)
	BN2166_0050080	Fe2OG dioxygenase domain-containing protein. (229 aa)
	BN2166_0060950	Glycosyl transferase family 90-domain containing protein. (707 aa)
	BN2166_0063300	Lon protease homolog; Belongs to the peptidase S16 family. (1011 aa)
	BN2166_0057840	annotation not available (676 aa)
	BN2166_0055580	annotation not available (440 aa)
	BN2166_0061110	annotation not available (789 aa)
	BN2166_0061910	Alpha-1,2-mannosyltransferase. (409 aa)
	BN2166_0063260	BY PROTMAP: gi\|342319502\|gb\|EGU11450.1\| Cas3p [Rhodotorula glutinis ATCC 204091]. (535 aa)
	BN2166_0059720	annotation not available (719 aa)
	BN2166_0060220	FGENESH: predicted gene_12.182 protein. (1091 aa)
	BN2166_0060470	BY PROTMAP: gi\|647397666\|emb\|CDR40896.1\| RHTO0S05e08482g1_1 [Rhodosporidium toruloides]. (569 aa)
	BN2166_0060570	annotation not available (758 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0003510	BN2166_0010230	A0A0K3C7N4	A0A0K3C934	BY PROTMAP: gi\|647396988\|emb\|CDR39755.1\| RHTO0S04e08746g1_1 [Rhodosporidium toruloides].	FGENESH: predicted gene_2.192 protein.	0.963
BN2166_0003510	BN2166_0025240	A0A0K3C7N4	A0A0K3CCL6	BY PROTMAP: gi\|647396988\|emb\|CDR39755.1\| RHTO0S04e08746g1_1 [Rhodosporidium toruloides].	annotation not available	0.988
BN2166_0010230	BN2166_0003510	A0A0K3C934	A0A0K3C7N4	FGENESH: predicted gene_2.192 protein.	BY PROTMAP: gi\|647396988\|emb\|CDR39755.1\| RHTO0S04e08746g1_1 [Rhodosporidium toruloides].	0.963
BN2166_0010230	BN2166_0025240	A0A0K3C934	A0A0K3CCL6	FGENESH: predicted gene_2.192 protein.	annotation not available	0.955
BN2166_0025240	BN2166_0003510	A0A0K3CCL6	A0A0K3C7N4	annotation not available	BY PROTMAP: gi\|647396988\|emb\|CDR39755.1\| RHTO0S04e08746g1_1 [Rhodosporidium toruloides].	0.988
BN2166_0025240	BN2166_0010230	A0A0K3CCL6	A0A0K3C934	annotation not available	FGENESH: predicted gene_2.192 protein.	0.955
BN2166_0034300	BN2166_0034670	A0A0K3CCT8	A0A0K3CK57	Capsular associated protein.	Uncharacterized protein.	0.663
BN2166_0034300	BN2166_0060470	A0A0K3CCT8	A0A0K3CSM1	Capsular associated protein.	BY PROTMAP: gi\|647397666\|emb\|CDR40896.1\| RHTO0S05e08482g1_1 [Rhodosporidium toruloides].	0.536
BN2166_0034670	BN2166_0034300	A0A0K3CK57	A0A0K3CCT8	Uncharacterized protein.	Capsular associated protein.	0.663
BN2166_0034670	BN2166_0046890	A0A0K3CK57	A0A0K3CIS6	Uncharacterized protein.	Glycosyltransferase family 90 protein.	0.402
BN2166_0034670	BN2166_0059720	A0A0K3CK57	A0A0K3CSE8	Uncharacterized protein.	annotation not available	0.466
BN2166_0034670	BN2166_0060220	A0A0K3CK57	A0A0K3CSJ5	Uncharacterized protein.	FGENESH: predicted gene_12.182 protein.	0.460
BN2166_0034670	BN2166_0060470	A0A0K3CK57	A0A0K3CSM1	Uncharacterized protein.	BY PROTMAP: gi\|647397666\|emb\|CDR40896.1\| RHTO0S05e08482g1_1 [Rhodosporidium toruloides].	0.690
BN2166_0034670	BN2166_0060570	A0A0K3CK57	A0A0K3CSM7	Uncharacterized protein.	annotation not available	0.466
BN2166_0034670	BN2166_0060950	A0A0K3CK57	A0A0K3CKP4	Uncharacterized protein.	Glycosyl transferase family 90-domain containing protein.	0.444
BN2166_0046890	BN2166_0034670	A0A0K3CIS6	A0A0K3CK57	Glycosyltransferase family 90 protein.	Uncharacterized protein.	0.402
BN2166_0046890	BN2166_0060470	A0A0K3CIS6	A0A0K3CSM1	Glycosyltransferase family 90 protein.	BY PROTMAP: gi\|647397666\|emb\|CDR40896.1\| RHTO0S05e08482g1_1 [Rhodosporidium toruloides].	0.415
BN2166_0059720	BN2166_0034670	A0A0K3CSE8	A0A0K3CK57	annotation not available	Uncharacterized protein.	0.466
BN2166_0059720	BN2166_0060470	A0A0K3CSE8	A0A0K3CSM1	annotation not available	BY PROTMAP: gi\|647397666\|emb\|CDR40896.1\| RHTO0S05e08482g1_1 [Rhodosporidium toruloides].	0.415
BN2166_0060220	BN2166_0034670	A0A0K3CSJ5	A0A0K3CK57	FGENESH: predicted gene_12.182 protein.	Uncharacterized protein.	0.460

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