STRINGSTRING
BN2166_0004000 BN2166_0004000 BN2166_0004400 BN2166_0004400 BN2166_0006400 BN2166_0006400 BN2166_0005990 BN2166_0005990 BN2166_0021100 BN2166_0021100 BN2166_0011480 BN2166_0011480 BN2166_0021440 BN2166_0021440 BN2166_0006770 BN2166_0006770 BN2166_0008720 BN2166_0008720 BN2166_0027690 BN2166_0027690 BN2166_0038950 BN2166_0038950 BN2166_0031790 BN2166_0031790 BN2166_0039090 BN2166_0039090 BN2166_0039140 BN2166_0039140 BN2166_0058470 BN2166_0058470 BN2166_0057020 BN2166_0057020 BN2166_0039120 BN2166_0039120 BN2166_0054840 BN2166_0054840 BN2166_0059300 BN2166_0059300 BN2166_0054650 BN2166_0054650
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0004000FGENESH: predicted gene_1.400 protein. (401 aa)
BN2166_00044006-phosphofructokinase; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade "E" sub-subfamily. (818 aa)
BN2166_0006400D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (483 aa)
BN2166_0005990BY PROTMAP: gi|472588423|gb|EMS25895.1| enolase [Rhodosporidium toruloides NP11]. (449 aa)
BN2166_0021100Probable acetate kinase. (445 aa)
BN2166_0011480Dak1 domain-domain containing protein. (615 aa)
BN2166_0021440GroES (Chaperonin 10)-like protein. (373 aa)
BN2166_0006770Sperm nuclear basic protein PL-I isoform PLIb. (239 aa)
BN2166_0008720Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. (362 aa)
BN2166_0027690S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (381 aa)
BN2166_0038950annotation not available (420 aa)
BN2166_0031790Acetyl-coenzyme A synthetase. (610 aa)
BN2166_0039090annotation not available (705 aa)
BN2166_0039140BY PROTMAP: gi|647398886|emb|CDR43153.1| RHTO0S07e08900g1_1 [Rhodosporidium toruloides]. (272 aa)
BN2166_0058470BY PROTMAP: gi|647398499|emb|CDR42512.1| RHTO0S07e00232g1_1 [Rhodosporidium toruloides]. (374 aa)
BN2166_0057020Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (214 aa)
BN2166_0039120Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family. (339 aa)
BN2166_0054840Glycine hydroxymethyltransferase. (471 aa)
BN2166_0059300Cleft lip and palate associated transmembrane protein. (664 aa)
BN2166_0054650S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde. (300 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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