(36 nodes) RNA polymerase network (Rhodotorula toruloides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN2166_0062870	Rpa49 subunit specific to nuclear RNA polymerase I. (458 aa)
	BN2166_0074560	DNA-directed RNA polymerase II. (130 aa)
	BN2166_0073140	RPA43_OB domain-containing protein. (528 aa)
	BN2166_0063410	RPOLD domain-containing protein. (797 aa)
	BN2166_0049720	DNA-directed RNA polymerase III subunit Rpc5. (347 aa)
	BN2166_0049170	UreD urease accessory protein-domain containing protein. (317 aa)
	BN2166_0064090	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1310 aa)
	BN2166_0060450	annotation not available (1036 aa)
	BN2166_0033120	BY PROTMAP: gi\|647399978\|emb\|CDR45008.1\| RHTO0S10e04126g1_1 [Rhodosporidium toruloides]. (210 aa)
	BN2166_0045780	annotation not available (410 aa)
	BN2166_0041460	annotation not available (336 aa)
	BN2166_0039260	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (199 aa)
	BN2166_0050150	FGENESH: predicted gene_9.361 protein. (140 aa)
	BN2166_0022120	RNA polymerase Rpc34 subunit-domain containing protein. (581 aa)
	BN2166_0031760	BTB domain-containing protein. (483 aa)
	BN2166_0031660	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1766 aa)
	BN2166_0031380	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (123 aa)
	BN2166_0030610	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1254 aa)
	BN2166_0029310	RNA polymerase III subunit Rpc25-domain containing protein. (236 aa)
	BN2166_0026510	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1804 aa)
	BN2166_0023660	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (616 aa)
	BN2166_0008620	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (570 aa)
	BN2166_0022640	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (123 aa)
	BN2166_0017690	RBR-type E3 ubiquitin transferase. (584 aa)
	BN2166_0014360	BY PROTMAP: gi\|647401247\|emb\|CDR47360.1\| RHTO0S14e02542g1_1 [Rhodosporidium toruloides]. (348 aa)
	BN2166_0013460	annotation not available (605 aa)
	BN2166_0013730	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1235 aa)
	BN2166_0023350	Scd6-like Sm domain-domain containing protein. (539 aa)
	BN2166_0009790	RNA polymerase Rpb3/Rpb11 dimerization domain-domain containing protein. (171 aa)
	BN2166_0005080	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1762 aa)
	BN2166_0014450	FGENESH: predicted gene_2.614 protein. (372 aa)
	BN2166_0002430	annotation not available (610 aa)
	BN2166_0000490	annotation not available (138 aa)
	BN2166_0002550	HRDC-like protein. (105 aa)
	BN2166_0046550	RHTO0S21e02696g1_1. (177 aa)
	BN2166_0067320	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa)

Your Current Organism:

Rhodotorula toruloides

NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN2166_0000490	BN2166_0002430	A0A0K3C5S6	A0A0K3C6W0	annotation not available	annotation not available	0.992
BN2166_0000490	BN2166_0002550	A0A0K3C5S6	A0A0K3C489	annotation not available	HRDC-like protein.	0.997
BN2166_0000490	BN2166_0005080	A0A0K3C5S6	A0A0K3C7L2	annotation not available	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
BN2166_0000490	BN2166_0009790	A0A0K3C5S6	A0A0K3C8C8	annotation not available	RNA polymerase Rpb3/Rpb11 dimerization domain-domain containing protein.	0.998
BN2166_0000490	BN2166_0013730	A0A0K3C5S6	A0A0K3CA30	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
BN2166_0000490	BN2166_0014360	A0A0K3C5S6	A0A0K3CAK6	annotation not available	BY PROTMAP: gi\|647401247\|emb\|CDR47360.1\| RHTO0S14e02542g1_1 [Rhodosporidium toruloides].	0.965
BN2166_0000490	BN2166_0014450	A0A0K3C5S6	A0A0K3C7A6	annotation not available	FGENESH: predicted gene_2.614 protein.	0.965
BN2166_0000490	BN2166_0022120	A0A0K3C5S6	A0A0K3CGR5	annotation not available	RNA polymerase Rpc34 subunit-domain containing protein.	0.994
BN2166_0000490	BN2166_0022640	A0A0K3C5S6	A0A0K3CC00	annotation not available	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
BN2166_0000490	BN2166_0023660	A0A0K3C5S6	A0A0K3CD82	annotation not available	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.992
BN2166_0000490	BN2166_0026510	A0A0K3C5S6	A0A0K3CE40	annotation not available	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
BN2166_0000490	BN2166_0029310	A0A0K3C5S6	A0A0K3CEX0	annotation not available	RNA polymerase III subunit Rpc25-domain containing protein.	0.995
BN2166_0000490	BN2166_0030610	A0A0K3C5S6	A0A0K3CF98	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
BN2166_0000490	BN2166_0031380	A0A0K3C5S6	A0A0K3CFF7	annotation not available	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.996
BN2166_0000490	BN2166_0031660	A0A0K3C5S6	A0A0K3CFM9	annotation not available	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
BN2166_0000490	BN2166_0031760	A0A0K3C5S6	A0A0K3CFN7	annotation not available	BTB domain-containing protein.	0.971
BN2166_0000490	BN2166_0033120	A0A0K3C5S6	A0A0K3CJT8	annotation not available	BY PROTMAP: gi\|647399978\|emb\|CDR45008.1\| RHTO0S10e04126g1_1 [Rhodosporidium toruloides].	0.999
BN2166_0000490	BN2166_0039260	A0A0K3C5S6	A0A0K3CHU3	annotation not available	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.985
BN2166_0000490	BN2166_0045780	A0A0K3C5S6	A0A0K3CJ91	annotation not available	annotation not available	0.999
BN2166_0000490	BN2166_0046550	A0A0K3C5S6	A0A061BG80	annotation not available	RHTO0S21e02696g1_1.	0.996

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