STRINGSTRING
BN2166_0043930 BN2166_0043930 BN2166_0010080 BN2166_0010080 BN2166_0012590 BN2166_0012590 BN2166_0014180 BN2166_0014180 BN2166_0016440 BN2166_0016440 BN2166_0016890 BN2166_0016890 BN2166_0026100 BN2166_0026100 BN2166_0016730 BN2166_0016730 BN2166_0075320 BN2166_0075320 BN2166_0075020 BN2166_0075020 BN2166_0074820 BN2166_0074820 BN2166_0069170 BN2166_0069170 BN2166_0068670 BN2166_0068670 BN2166_0075110 BN2166_0075110 BN2166_0074810 BN2166_0074810 BN2166_0072510 BN2166_0072510 BN2166_0009780 BN2166_0009780 BN2166_0009130 BN2166_0009130 BN2166_0008380 BN2166_0008380 BN2166_0008540 BN2166_0008540 BN2166_0008190 BN2166_0008190 BN2166_0008900 BN2166_0008900 BN2166_0008600 BN2166_0008600 BN2166_0005250 BN2166_0005250 BN2166_0005200 BN2166_0005200 BN2166_0002500 BN2166_0002500 BN2166_0048390 BN2166_0048390 BN2166_0002170 BN2166_0002170 BN2166_0070030 BN2166_0070030 BN2166_0054770 BN2166_0054770 BN2166_0068930 BN2166_0068930 BN2166_0067080 BN2166_0067080 BN2166_0065380 BN2166_0065380 BN2166_0071250 BN2166_0071250 BN2166_0066300 BN2166_0066300 BN2166_0066250 BN2166_0066250 BN2166_0062550 BN2166_0062550 BN2166_0052830 BN2166_0052830 BN2166_0061100 BN2166_0061100 BN2166_0047260 BN2166_0047260 BN2166_0046860 BN2166_0046860 BN2166_0046210 BN2166_0046210 BN2166_0049990 BN2166_0049990 BN2166_0043510 BN2166_0043510 BN2166_0053950 BN2166_0053950 BN2166_0026670 BN2166_0026670 BN2166_0038730 BN2166_0038730 BN2166_0040240 BN2166_0040240 BN2166_0039440 BN2166_0039440 BN2166_0032610 BN2166_0032610 BN2166_0032580 BN2166_0032580 BN2166_0017520 BN2166_0017520 BN2166_0030630 BN2166_0030630 BN2166_0028160 BN2166_0028160 BN2166_0039050 BN2166_0039050 BN2166_0011870 BN2166_0011870 BN2166_0024380 BN2166_0024380 BN2166_0022210 BN2166_0022210 BN2166_0024390 BN2166_0024390 BN2166_0023890 BN2166_0023890 BN2166_0020680 BN2166_0020680 BN2166_0017610 BN2166_0017610 BN2166_0020240 BN2166_0020240 BN2166_0017230 BN2166_0017230 BN2166_0019740 BN2166_0019740 BN2166_0028050 BN2166_0028050
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0043930BY PROTMAP: gi|342321555|gb|EGU13488.1| Hydrophilic protein [Rhodotorula glutinis ATCC 204091]. (370 aa)
BN2166_0010080Uncharacterized protein. (459 aa)
BN2166_0012590annotation not available (455 aa)
BN2166_0014180annotation not available (1032 aa)
BN2166_0016440RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (496 aa)
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
BN2166_0026100Putative RFC3-DNA replication factor C, 40 kDa subunit. (357 aa)
BN2166_0016730FGENESH: predicted gene_3.124 protein. (789 aa)
BN2166_0075320FGENESH: predicted gene_29.1 protein. (1456 aa)
BN2166_0075020FGENESH: predicted gene_24.1 protein. (390 aa)
BN2166_0074820FGENESH: predicted gene_20.5 protein. (1374 aa)
BN2166_0069170FGENESH: predicted gene_15.198 protein. (1428 aa)
BN2166_0068670DNA ligase. (872 aa)
BN2166_0075110FGENESH: predicted gene_25.1 protein. (987 aa)
BN2166_0074810FGENESH: predicted gene_20.4 protein. (781 aa)
BN2166_0072510FGENESH: predicted gene_17.109 protein. (1594 aa)
BN2166_0009780BY PROTMAP: gi|342319889|gb|EGU11834.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (274 aa)
BN2166_0009130Restriction endonuclease type II-like protein. (332 aa)
BN2166_0008380Putative DNA polymerase. (210 aa)
BN2166_0008540FGENESH: predicted gene_2.23 protein. (1833 aa)
BN2166_0008190annotation not available (1088 aa)
BN2166_0008900XPC-binding domain-domain containing protein. (403 aa)
BN2166_0008600Uncharacterized protein. (235 aa)
BN2166_0005250BY PROTMAP: gi|342320736|gb|EGU12675.1| DNA ligase [Rhodotorula glutinis ATCC 204091]. (946 aa)
BN2166_0005200annotation not available (1304 aa)
BN2166_0002500BY PROTMAP: gi|342319348|gb|EGU11297.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (652 aa)
BN2166_0048390FGENESH: predicted gene_9.185 protein. (101 aa)
BN2166_0002170DNA replication factor A subunit Ssb3. (108 aa)
BN2166_0070030annotation not available (1384 aa)
BN2166_0054770ERCC4 domain-containing protein. (1060 aa)
BN2166_0068930Uncharacterized protein. (1118 aa)
BN2166_0067080annotation not available (871 aa)
BN2166_0065380BY PROTMAP: gi|342319026|gb|EGU10978.1| CMGC/CDK protein kinase [Rhodotorula glutinis ATCC 204091]. (409 aa)
BN2166_0071250BY PROTMAP: gi|647400950|emb|CDR46824.1| RHTO0S13e02278g1_1 [Rhodosporidium toruloides]. (864 aa)
BN2166_0066300annotation not available (1334 aa)
BN2166_0066250annotation not available (1102 aa)
BN2166_0062550TFIIH subunit Tfb4/p34. (347 aa)
BN2166_0052830DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2246 aa)
BN2166_0061100BY PROTMAP: gi|814543146|emb|CEQ39523.1| SPOSA6832_01050 [Sporidiobolus salmonicolor]. (389 aa)
BN2166_0047260FGENESH: predicted gene_9.72 protein. (1762 aa)
BN2166_0046860Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (388 aa)
BN2166_0046210Belongs to the protein kinase superfamily. (354 aa)
BN2166_0049990DNA polymerase. (1118 aa)
BN2166_0043510Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (157 aa)
BN2166_0053950DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (585 aa)
BN2166_0026670FGENESH: predicted gene_5.212 protein. (360 aa)
BN2166_0038730annotation not available (415 aa)
BN2166_0040240BY PROTMAP: gi|342320419|gb|EGU12359.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1583 aa)
BN2166_0039440annotation not available (268 aa)
BN2166_0032610Belongs to the cullin family. (803 aa)
BN2166_0032580Replication factor C subunit 1. (887 aa)
BN2166_0017520BY PROTMAP: gi|472583956|gb|EMS21572.1| DNA ligase [Rhodosporidium toruloides NP11]. (545 aa)
BN2166_0030630Uncharacterized protein. (148 aa)
BN2166_0028160Replication factor C subunit 4. (438 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0011870annotation not available (1800 aa)
BN2166_0024380FGENESH: predicted gene_4.214 protein. (2249 aa)
BN2166_0022210FGENESH: predicted gene_3.672 protein. (781 aa)
BN2166_0024390FGENESH: predicted gene_4.215 protein. (2233 aa)
BN2166_0023890annotation not available (374 aa)
BN2166_0020680FGENESH: predicted gene_3.519 protein. (1459 aa)
BN2166_0017610FGENESH: predicted gene_3.212 protein. (1777 aa)
BN2166_0020240annotation not available (633 aa)
BN2166_0017230General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (451 aa)
BN2166_0019740Cyclin-like protein; Belongs to the cyclin family. (404 aa)
BN2166_0028050CWC16 protein. (323 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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