STRINGSTRING
BN2166_0075020 BN2166_0075020 BN2166_0073070 BN2166_0073070 BN2166_0072770 BN2166_0072770 BN2166_0065470 BN2166_0065470 BN2166_0064920 BN2166_0064920 BN2166_0064520 BN2166_0064520 BN2166_0075110 BN2166_0075110 BN2166_0074810 BN2166_0074810 BN2166_0074460 BN2166_0074460 BN2166_0072510 BN2166_0072510 BN2166_0018610 BN2166_0018610 BN2166_0004570 BN2166_0004570 BN2166_0017610 BN2166_0017610 BN2166_0029700 BN2166_0029700 BN2166_0028050 BN2166_0028050 BN2166_0016890 BN2166_0016890 BN2166_0011180 BN2166_0011180 BN2166_0012590 BN2166_0012590 BN2166_0010080 BN2166_0010080 BN2166_0009740 BN2166_0009740 BN2166_0008540 BN2166_0008540 BN2166_0008190 BN2166_0008190 BN2166_0015600 BN2166_0015600 PIF1 PIF1 BN2166_0002940 BN2166_0002940 BN2166_0008600 BN2166_0008600 BN2166_0005150 BN2166_0005150 BN2166_0002500 BN2166_0002500 BN2166_0002170 BN2166_0002170 BN2166_0022240 BN2166_0022240 BN2166_0004670 BN2166_0004670 BN2166_0019260 BN2166_0019260 BN2166_0020380 BN2166_0020380 BN2166_0020680 BN2166_0020680 BN2166_0006320 BN2166_0006320 BN2166_0024390 BN2166_0024390 BN2166_0022210 BN2166_0022210 BN2166_0035600 BN2166_0035600 BN2166_0024380 BN2166_0024380 BN2166_0026630 BN2166_0026630 BN2166_0039050 BN2166_0039050 BN2166_0074780 BN2166_0074780 BN2166_0075140 BN2166_0075140 BN2166_0074890 BN2166_0074890 BN2166_0070030 BN2166_0070030 BN2166_0064910 BN2166_0064910 BN2166_0075350 BN2166_0075350 BN2166_0074850 BN2166_0074850 BN2166_0074450 BN2166_0074450 BN2166_0067590 BN2166_0067590 BN2166_0047320 BN2166_0047320 BN2166_0064690 BN2166_0064690 BN2166_0045720 BN2166_0045720 BN2166_0055910 BN2166_0055910 BN2166_0066300 BN2166_0066300 BN2166_0064900 BN2166_0064900 BN2166_0061100 BN2166_0061100 BN2166_0047260 BN2166_0047260 BN2166_0033270 BN2166_0033270 BN2166_0049990 BN2166_0049990 BN2166_0043510 BN2166_0043510 BN2166_0036510 BN2166_0036510 BN2166_0039440 BN2166_0039440 BN2166_0045950 BN2166_0045950 BN2166_0030630 BN2166_0030630 BN2166_0028130 BN2166_0028130 BN2166_0075320 BN2166_0075320 BN2166_0074820 BN2166_0074820
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BN2166_0075020FGENESH: predicted gene_24.1 protein. (390 aa)
BN2166_0073070Uncharacterized protein. (2352 aa)
BN2166_0072770Rad51 domain-containing protein. (361 aa)
BN2166_0065470BY PROTMAP: gi|342319021|gb|EGU10973.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091]. (1208 aa)
BN2166_0064920AAA_23 domain-containing protein. (197 aa)
BN2166_0064520BY PROTMAP: gi|472585507|gb|EMS23058.1| bloom syndrome protein [Rhodosporidium toruloides NP11]. (1529 aa)
BN2166_0075110FGENESH: predicted gene_25.1 protein. (987 aa)
BN2166_0074810FGENESH: predicted gene_20.4 protein. (781 aa)
BN2166_0074460annotation not available (661 aa)
BN2166_0072510FGENESH: predicted gene_17.109 protein. (1594 aa)
BN2166_0018610annotation not available (709 aa)
BN2166_0004570DNA repair protein RAD51 homolog; Required both for recombination and for the repair of DNA damage caused by X-rays; Belongs to the RecA family. RAD51 subfamily. (345 aa)
BN2166_0017610FGENESH: predicted gene_3.212 protein. (1777 aa)
BN2166_0029700BY PROTMAP: gi|647399254|emb|CDR43820.1| RHTO0S08e06326g1_1 [Rhodosporidium toruloides]. (596 aa)
BN2166_0028050CWC16 protein. (323 aa)
BN2166_0016890DNA polymerase subunit Cdc27. (418 aa)
BN2166_0011180BY PROTMAP: gi|342319958|gb|EGU11903.1| RAD51-like protein 2 ISS [Rhodotorula glutinis ATCC 204091]. (297 aa)
BN2166_0012590annotation not available (455 aa)
BN2166_0010080Uncharacterized protein. (459 aa)
BN2166_0009740PITH domain-domain containing protein. (203 aa)
BN2166_0008540FGENESH: predicted gene_2.23 protein. (1833 aa)
BN2166_0008190annotation not available (1088 aa)
BN2166_0015600annotation not available (1265 aa)
PIF1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (681 aa)
BN2166_0002940annotation not available (115 aa)
BN2166_0008600Uncharacterized protein. (235 aa)
BN2166_0005150annotation not available (663 aa)
BN2166_0002500BY PROTMAP: gi|342319348|gb|EGU11297.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091]. (652 aa)
BN2166_0002170DNA replication factor A subunit Ssb3. (108 aa)
BN2166_0022240FGENESH: predicted gene_3.675 protein. (157 aa)
BN2166_0004670annotation not available (1118 aa)
BN2166_0019260ATP-dependent DNA helicase; Belongs to the helicase family. (867 aa)
BN2166_0020380annotation not available (143 aa)
BN2166_0020680FGENESH: predicted gene_3.519 protein. (1459 aa)
BN2166_0006320Rad51-associated protein Brh2. (1137 aa)
BN2166_0024390FGENESH: predicted gene_4.215 protein. (2233 aa)
BN2166_0022210FGENESH: predicted gene_3.672 protein. (781 aa)
BN2166_0035600DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1012 aa)
BN2166_0024380FGENESH: predicted gene_4.214 protein. (2249 aa)
BN2166_0026630annotation not available (351 aa)
BN2166_0039050Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (620 aa)
BN2166_0074780FGENESH: predicted gene_20.1 protein. (596 aa)
BN2166_0075140FGENESH: predicted gene_25.4 protein. (590 aa)
BN2166_0074890FGENESH: predicted gene_21.4 protein. (585 aa)
BN2166_0070030annotation not available (1384 aa)
BN2166_0064910FGENESH: predicted gene_14.41 protein. (914 aa)
BN2166_0075350FGENESH: predicted gene_29.4 protein. (581 aa)
BN2166_0074850FGENESH: predicted gene_20.8 protein. (406 aa)
BN2166_0074450DNA repair protein, SNF2 family. (852 aa)
BN2166_0067590ATP-dependent RNA helicase ROK1; Belongs to the DEAD box helicase family. (650 aa)
BN2166_0047320BY PROTMAP: gi|342319987|gb|EGU11932.1| putative Endonuclease [Rhodotorula glutinis ATCC 204091]. (1073 aa)
BN2166_0064690BY PROTMAP: gi|342319058|gb|EGU11010.1| putative RAD57 protein [Rhodotorula glutinis ATCC 204091]. (556 aa)
BN2166_0045720Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (743 aa)
BN2166_0055910annotation not available (256 aa)
BN2166_0066300annotation not available (1334 aa)
BN2166_0064900Uncharacterized protein. (189 aa)
BN2166_0061100BY PROTMAP: gi|814543146|emb|CEQ39523.1| SPOSA6832_01050 [Sporidiobolus salmonicolor]. (389 aa)
BN2166_0047260FGENESH: predicted gene_9.72 protein. (1762 aa)
BN2166_0033270annotation not available (424 aa)
BN2166_0049990DNA polymerase. (1118 aa)
BN2166_0043510Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (157 aa)
BN2166_0036510annotation not available (1160 aa)
BN2166_0039440annotation not available (268 aa)
BN2166_0045950Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily. (3051 aa)
BN2166_0030630Uncharacterized protein. (148 aa)
BN2166_0028130FGENESH: predicted gene_5.358 protein. (325 aa)
BN2166_0075320FGENESH: predicted gene_29.1 protein. (1456 aa)
BN2166_0074820FGENESH: predicted gene_20.5 protein. (1374 aa)
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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