STRINGSTRING
Psta_0071 Psta_0071 Psta_0350 Psta_0350 Psta_0488 Psta_0488 Psta_0909 Psta_0909 Psta_1656 Psta_1656 Psta_4015 Psta_4015 Psta_4762 Psta_4762
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Psta_0071KEGG: mex:Mext_0495 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (352 aa)
Psta_0350Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; GGDEF domain containing protein; KEGG: aeh:Mlg_1873 diguanylate cyclase. (551 aa)
Psta_0488KEGG: gsu:GSU1643 GGDEF/response regulator receiver domain-containing protein; TIGRFAM: diguanylate cyclase; PFAM: CBS domain containing protein; GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver. (486 aa)
Psta_0909KEGG: pla:Plav_3254 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (500 aa)
Psta_1656KEGG: gsu:GSU2313 response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; CBS domain containing protein; response regulator receiver. (569 aa)
Psta_4015Diguanylate cyclase and metal dependent phosphohydrolase; KEGG: gbm:Gbem_2068 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; metal- dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: GGDEF domain containing protein; metal- dependent phosphohydrolase HD region; PAS domain containing protein. (779 aa)
Psta_4762KEGG: pfo:Pfl01_1336 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein. (437 aa)
Your Current Organism:
Pirellula staleyi
NCBI taxonomy Id: 530564
Other names: P. staleyi DSM 6068, Pirellula staleyi ATCC 27377, Pirellula staleyi DSM 6068, Pirellula staleyi str. DSM 6068, Pirellula staleyi strain DSM 6068
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