(11 nodes) NAD+ binding network (Prauserella marina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDD41996.1	3-hydroxybutyryl-CoA dehydrogenase. (273 aa)
	SDD27716.1	3-hydroxybutyryl-CoA dehydrogenase. (592 aa)
	SDD25479.1	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase. (723 aa)
	SDD15509.1	3-hydroxybutyryl-CoA dehydrogenase. (286 aa)
	SDC99208.1	3-hydroxybutyryl-CoA dehydrogenase. (315 aa)
	SDC85852.1	NAD-dependent protein deacetylase, SIR2 family. (272 aa)
	SDC53855.1	NAD-dependent deacetylase. (261 aa)
	SDC46190.1	3-hydroxyacyl-CoA dehydrogenase. (512 aa)
	SDC21821.1	Carnitine 3-dehydrogenase. (316 aa)
	SDC15586.1	3-hydroxyacyl-CoA dehydrogenase. (702 aa)
	SDC07891.1	3-hydroxyacyl-CoA dehydrogenase. (313 aa)

Your Current Organism:

Prauserella marina

NCBI taxonomy Id: 530584
Other names: CCTCC AA 208056, DSM 45268, Prauserella marina Wang et al. 2010, Prauserella sp. Ms498, strain MS498

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDC07891.1	SDC15586.1	SAMN05421630_101343	SAMN05421630_101625	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.445
SDC15586.1	SDC07891.1	SAMN05421630_101625	SAMN05421630_101343	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.445
SDC15586.1	SDC46190.1	SAMN05421630_101625	SAMN05421630_102199	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.503
SDC15586.1	SDC99208.1	SAMN05421630_101625	SAMN05421630_10578	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.474
SDC15586.1	SDD15509.1	SAMN05421630_101625	SAMN05421630_106161	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.450
SDC15586.1	SDD25479.1	SAMN05421630_101625	SAMN05421630_1078	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.542
SDC15586.1	SDD27716.1	SAMN05421630_101625	SAMN05421630_10796	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.468
SDC15586.1	SDD41996.1	SAMN05421630_101625	SAMN05421630_108115	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.460
SDC21821.1	SDD15509.1	SAMN05421630_101853	SAMN05421630_106161	Carnitine 3-dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.569
SDC21821.1	SDD25479.1	SAMN05421630_101853	SAMN05421630_1078	Carnitine 3-dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.423
SDC46190.1	SDC15586.1	SAMN05421630_102199	SAMN05421630_101625	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.503
SDC46190.1	SDD25479.1	SAMN05421630_102199	SAMN05421630_1078	3-hydroxyacyl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.945
SDC99208.1	SDC15586.1	SAMN05421630_10578	SAMN05421630_101625	3-hydroxybutyryl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.474
SDC99208.1	SDD25479.1	SAMN05421630_10578	SAMN05421630_1078	3-hydroxybutyryl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.938
SDD15509.1	SDC15586.1	SAMN05421630_106161	SAMN05421630_101625	3-hydroxybutyryl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase.	0.450
SDD15509.1	SDC21821.1	SAMN05421630_106161	SAMN05421630_101853	3-hydroxybutyryl-CoA dehydrogenase.	Carnitine 3-dehydrogenase.	0.569
SDD15509.1	SDD25479.1	SAMN05421630_106161	SAMN05421630_1078	3-hydroxybutyryl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.938
SDD25479.1	SDC15586.1	SAMN05421630_1078	SAMN05421630_101625	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	3-hydroxyacyl-CoA dehydrogenase.	0.542
SDD25479.1	SDC21821.1	SAMN05421630_1078	SAMN05421630_101853	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	Carnitine 3-dehydrogenase.	0.423
SDD25479.1	SDC46190.1	SAMN05421630_1078	SAMN05421630_102199	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	3-hydroxyacyl-CoA dehydrogenase.	0.945