(8 nodes) PKD domain superfamily network (Prauserella marina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDD99561.1	Glucose/arabinose dehydrogenase, beta-propeller fold. (689 aa)
	SDD51934.1	PKD domain-containing protein. (1055 aa)
	SDD12011.1	Glucose/arabinose dehydrogenase, beta-propeller fold. (689 aa)
	SDD05781.1	PKD domain-containing protein. (1332 aa)
	SDC20616.1	PKD domain-containing protein. (1203 aa)
	SDC41315.1	Glucose/arabinose dehydrogenase, beta-propeller fold. (691 aa)
	SDC57697.1	Glucose/arabinose dehydrogenase, beta-propeller fold. (1535 aa)
	SDC82350.1	Glucose/arabinose dehydrogenase, beta-propeller fold. (846 aa)

Your Current Organism:

Prauserella marina

NCBI taxonomy Id: 530584
Other names: CCTCC AA 208056, DSM 45268, Prauserella marina Wang et al. 2010, Prauserella sp. Ms498, strain MS498

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDC20616.1	SDC57697.1	SAMN05421630_101810	SAMN05421630_102649	PKD domain-containing protein.	Glucose/arabinose dehydrogenase, beta-propeller fold.	0.929
SDC20616.1	SDD51934.1	SAMN05421630_101810	SAMN05421630_109206	PKD domain-containing protein.	PKD domain-containing protein.	0.929
SDC57697.1	SDC20616.1	SAMN05421630_102649	SAMN05421630_101810	Glucose/arabinose dehydrogenase, beta-propeller fold.	PKD domain-containing protein.	0.929
SDC57697.1	SDD51934.1	SAMN05421630_102649	SAMN05421630_109206	Glucose/arabinose dehydrogenase, beta-propeller fold.	PKD domain-containing protein.	0.928
SDD51934.1	SDC20616.1	SAMN05421630_109206	SAMN05421630_101810	PKD domain-containing protein.	PKD domain-containing protein.	0.929
SDD51934.1	SDC57697.1	SAMN05421630_109206	SAMN05421630_102649	PKD domain-containing protein.	Glucose/arabinose dehydrogenase, beta-propeller fold.	0.928