(22 nodes) U2 snRNP, and U1 snRNA binding network (Nannizzia gypsea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MGYG_02003	Pre-mRNA branch site protein p14. (116 aa)
	MGYG_02053	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (125 aa)
	MGYG_03219	U2 small nuclear ribonucleoprotein A. (259 aa)
	MGYG_04282	Splicing factor 3A subunit 3. (504 aa)
	MGYG_04154	Splicing factor 3B subunit 2. (574 aa)
	MGYG_04654	SMB. (207 aa)
	MGYG_04754	U1 small nuclear ribonucleoprotein A. (186 aa)
	MGYG_05551	Splicing factor 3 subunit 1. (656 aa)
	MGYG_04873	Sm domain-containing protein. (90 aa)
	MGYG_05039	Small nuclear ribonucleoprotein G. (78 aa)
	MGYG_06202	U1 small nuclear ribonucleoprotein A. (256 aa)
	MGYG_06251	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	MGYG_06302	Splicing factor 3B subunit 4. (382 aa)
	MGYG_06150	U2 snRNP component prp10. (1244 aa)
	MGYG_06661	Pre-mRNA-processing ATP-dependent RNA helicase PRP5. (1183 aa)
	MGYG_06749	Splicing factor 3A subunit 2. (241 aa)
	MGYG_07578	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (95 aa)
	MGYG_07638	Small nuclear ribonucleoprotein Sm D2. (135 aa)
	MGYG_07680	U1 small nuclear ribonucleoprotein. (405 aa)
	MGYG_07746	Pre-mRNA-splicing factor ini1. (117 aa)
	MGYG_00332	Pre-mRNA-splicing factor rse1. (1181 aa)
	MGYG_01055	Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)

Your Current Organism:

Nannizzia gypsea

NCBI taxonomy Id: 535722
Other names: Arthroderma gypseum CBS 118893, Microsporum gypseum CBS 118893, N. gypsea CBS 118893, Nannizzia gypsea CBS 118893

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MGYG_00332	MGYG_01055	E5QZ59	E5R3V8	Pre-mRNA-splicing factor rse1.	Splicing factor subunit; Belongs to the SF3B5 family.	0.999
MGYG_00332	MGYG_02003	E5QZ59	E4UP50	Pre-mRNA-splicing factor rse1.	Pre-mRNA branch site protein p14.	0.999
MGYG_00332	MGYG_02053	E5QZ59	E4UPF2	Pre-mRNA-splicing factor rse1.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.981
MGYG_00332	MGYG_03219	E5QZ59	E4URK6	Pre-mRNA-splicing factor rse1.	U2 small nuclear ribonucleoprotein A.	0.997
MGYG_00332	MGYG_04154	E5QZ59	E4UV33	Pre-mRNA-splicing factor rse1.	Splicing factor 3B subunit 2.	0.999
MGYG_00332	MGYG_04282	E5QZ59	E4US20	Pre-mRNA-splicing factor rse1.	Splicing factor 3A subunit 3.	0.997
MGYG_00332	MGYG_04654	E5QZ59	E4UVZ1	Pre-mRNA-splicing factor rse1.	SMB.	0.988
MGYG_00332	MGYG_04754	E5QZ59	E4UWJ7	Pre-mRNA-splicing factor rse1.	U1 small nuclear ribonucleoprotein A.	0.962
MGYG_00332	MGYG_04873	E5QZ59	E4UXC7	Pre-mRNA-splicing factor rse1.	Sm domain-containing protein.	0.988
MGYG_00332	MGYG_05039	E5QZ59	E4UY74	Pre-mRNA-splicing factor rse1.	Small nuclear ribonucleoprotein G.	0.985
MGYG_00332	MGYG_05551	E5QZ59	E4UWL1	Pre-mRNA-splicing factor rse1.	Splicing factor 3 subunit 1.	0.993
MGYG_00332	MGYG_06150	E5QZ59	E4V0L8	Pre-mRNA-splicing factor rse1.	U2 snRNP component prp10.	0.999
MGYG_00332	MGYG_06202	E5QZ59	E4UYM3	Pre-mRNA-splicing factor rse1.	U1 small nuclear ribonucleoprotein A.	0.962
MGYG_00332	MGYG_06251	E5QZ59	E4UYR9	Pre-mRNA-splicing factor rse1.	Small nuclear ribonucleoprotein Sm D3.	0.963
MGYG_00332	MGYG_06302	E5QZ59	E4UYX2	Pre-mRNA-splicing factor rse1.	Splicing factor 3B subunit 4.	0.999
MGYG_00332	MGYG_06661	E5QZ59	E4V0V0	Pre-mRNA-splicing factor rse1.	Pre-mRNA-processing ATP-dependent RNA helicase PRP5.	0.995
MGYG_00332	MGYG_06749	E5QZ59	E4V135	Pre-mRNA-splicing factor rse1.	Splicing factor 3A subunit 2.	0.997
MGYG_00332	MGYG_07578	E5QZ59	E4V3J8	Pre-mRNA-splicing factor rse1.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.991
MGYG_00332	MGYG_07638	E5QZ59	E4V3Q7	Pre-mRNA-splicing factor rse1.	Small nuclear ribonucleoprotein Sm D2.	0.976
MGYG_00332	MGYG_07680	E5QZ59	E4V3V0	Pre-mRNA-splicing factor rse1.	U1 small nuclear ribonucleoprotein.	0.938