(28 nodes) Mixed, incl. Outer kinetochore, and Pentatricopeptide repeat network (Nannizzia gypsea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MGYG_03278	Uncharacterized protein. (100 aa)
	MGYG_08982	Uncharacterized protein. (615 aa)
	MGYG_02918	Spindle pole body component. (887 aa)
	MGYG_03087	Uncharacterized protein. (1217 aa)
	MGYG_03208	Pentatricopeptide repeat protein. (1312 aa)
	MGYG_08974	Uncharacterized protein. (502 aa)
	MGYG_08975	Tafazzin family protein; Belongs to the taffazin family. (331 aa)
	MGYG_03530	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (437 aa)
	MGYG_04398	Spindle pole body component. (954 aa)
	MGYG_04473	Spindle pole body component. (874 aa)
	MGYG_05400	Spindle pole body component. (785 aa)
	MGYG_05596	Uncharacterized protein. (244 aa)
	MGYG_04875	Uncharacterized protein. (95 aa)
	MGYG_07426	Uncharacterized protein. (351 aa)
	MGYG_07623	Uncharacterized protein. (662 aa)
	MGYG_07740	Uncharacterized protein. (158 aa)
	MGYG_08024	Pentatricopeptide repeat protein. (797 aa)
	MGYG_08193	Uncharacterized protein. (796 aa)
	MGYG_08432	Uncharacterized protein. (90 aa)
	MGYG_08650	Pentatricopeptide repeat protein. (807 aa)
	MGYG_08659	Uncharacterized protein. (66 aa)
	MGYG_01949	Uncharacterized protein. (142 aa)
	MGYG_00368	Uncharacterized protein. (215 aa)
	MGYG_01301	Spindle pole body component. (1008 aa)
	MGYG_00534	Uncharacterized protein. (169 aa)
	MGYG_00612	Meiotically up-regulated 65 protein. (415 aa)
	MGYG_01736	Pentatricopeptide repeat protein. (729 aa)
	MGYG_01795	Uncharacterized protein. (436 aa)

Your Current Organism:

Nannizzia gypsea

NCBI taxonomy Id: 535722
Other names: Arthroderma gypseum CBS 118893, Microsporum gypseum CBS 118893, N. gypsea CBS 118893, Nannizzia gypsea CBS 118893

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MGYG_00368	MGYG_00534	E5QZ96	E5R083	Uncharacterized protein.	Uncharacterized protein.	0.967
MGYG_00368	MGYG_01301	E5QZ96	E5R017	Uncharacterized protein.	Spindle pole body component.	0.852
MGYG_00368	MGYG_01795	E5QZ96	E5R3I1	Uncharacterized protein.	Uncharacterized protein.	0.948
MGYG_00368	MGYG_01949	E5QZ96	E5QZ27	Uncharacterized protein.	Uncharacterized protein.	0.965
MGYG_00368	MGYG_03278	E5QZ96	E4UMS1	Uncharacterized protein.	Uncharacterized protein.	0.966
MGYG_00368	MGYG_04398	E5QZ96	E4USU2	Uncharacterized protein.	Spindle pole body component.	0.881
MGYG_00368	MGYG_04875	E5QZ96	E4UXC8	Uncharacterized protein.	Uncharacterized protein.	0.984
MGYG_00368	MGYG_05596	E5QZ96	E4UWQ6	Uncharacterized protein.	Uncharacterized protein.	0.967
MGYG_00368	MGYG_08432	E5QZ96	E4V5P5	Uncharacterized protein.	Uncharacterized protein.	0.835
MGYG_00534	MGYG_00368	E5R083	E5QZ96	Uncharacterized protein.	Uncharacterized protein.	0.967
MGYG_00534	MGYG_01301	E5R083	E5R017	Uncharacterized protein.	Spindle pole body component.	0.812
MGYG_00534	MGYG_01795	E5R083	E5R3I1	Uncharacterized protein.	Uncharacterized protein.	0.885
MGYG_00534	MGYG_01949	E5R083	E5QZ27	Uncharacterized protein.	Uncharacterized protein.	0.972
MGYG_00534	MGYG_03278	E5R083	E4UMS1	Uncharacterized protein.	Uncharacterized protein.	0.961
MGYG_00534	MGYG_04398	E5R083	E4USU2	Uncharacterized protein.	Spindle pole body component.	0.878
MGYG_00534	MGYG_04875	E5R083	E4UXC8	Uncharacterized protein.	Uncharacterized protein.	0.911
MGYG_00534	MGYG_05596	E5R083	E4UWQ6	Uncharacterized protein.	Uncharacterized protein.	0.973
MGYG_00534	MGYG_08432	E5R083	E4V5P5	Uncharacterized protein.	Uncharacterized protein.	0.890
MGYG_00612	MGYG_01301	E5R0R5	E5R017	Meiotically up-regulated 65 protein.	Spindle pole body component.	0.651
MGYG_00612	MGYG_01795	E5R0R5	E5R3I1	Meiotically up-regulated 65 protein.	Uncharacterized protein.	0.651