(80 nodes) Non-membrane-bounded organelle assembly network (Nannizzia gypsea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MGYG_03270	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (94 aa)
	MGYG_02446	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4928 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
	MGYG_03339	Nucleolysin TIA-1. (506 aa)
	MGYG_02567	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (909 aa)
	MGYG_02740	26S proteasome non-ATPase regulatory subunit 14. (333 aa)
	MGYG_02035	60S ribosomal protein L10-B. (224 aa)
	MGYG_02906	RING-6. (456 aa)
	MGYG_02918	Spindle pole body component. (887 aa)
	MGYG_02950	Ribosomal_S7 domain-containing protein. (388 aa)
	MGYG_02198	Eukaryotic translation initiation factor 5. (431 aa)
	MGYG_03155	RNA exonuclease 4. (307 aa)
	MGYG_03156	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (426 aa)
	MGYG_03178	Topoisomerase II. (853 aa)
	MGYG_04186	Periodic tryptophan protein 2. (958 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (244 aa)
	MGYG_03499	Uncharacterized protein. (357 aa)
	MGYG_03530	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome. (437 aa)
	MGYG_03555	60S ribosomal protein L5. (299 aa)
	MGYG_03653	Ribosome assembly protein SQT1. (510 aa)
	MGYG_04473	Spindle pole body component. (874 aa)
	MGYG_04476	Uncharacterized protein. (594 aa)
	MGYG_04531	60S ribosomal protein L6-B. (198 aa)
	MGYG_03714	Nucleolar GTP-binding protein 2. (679 aa)
	MGYG_03806	F-box domain-containing protein. (372 aa)
	MGYG_03807	Ribosome biogenesis protein BRX1. (391 aa)
	MGYG_03825	Uncharacterized protein. (793 aa)
	MGYG_03861	Non-specific serine/threonine protein kinase. (853 aa)
	MGYG_04124	60S ribosomal protein L23a. (152 aa)
	MGYG_05350	30S ribosomal protein S28e. (68 aa)
	MGYG_05360	Uncharacterized protein. (128 aa)
	MGYG_05400	Spindle pole body component. (785 aa)
	MGYG_05436	rRNA biogenesis protein RRP5. (1821 aa)
	MGYG_05487	Uncharacterized protein. (288 aa)
	MGYG_05542	CENP-T_C domain-containing protein. (462 aa)
	MGYG_05581	40S ribosomal protein S27. (94 aa)
	MGYG_05754	Mitochondrial acidic protein MAM33. (288 aa)
	MGYG_05807	Mitochondrial large ribosomal subunit; Belongs to the universal ribosomal protein uL22 family. (338 aa)
	MGYG_05058	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	MGYG_05068	Uncharacterized protein. (388 aa)
	MGYG_05164	Ribosome biogenesis protein RPF2. (348 aa)
	MGYG_06350	Cupin domain-containing protein. (615 aa)
	MGYG_06389	Uncharacterized protein. (474 aa)
	MGYG_06390	Uncharacterized protein. (99 aa)
	MGYG_06407	Uncharacterized protein. (1475 aa)
	MGYG_06549	WD repeat-containing protein. (515 aa)
	MGYG_06581	Uncharacterized protein. (94 aa)
	MGYG_05890	Uncharacterized protein. (333 aa)
	MGYG_05959	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (311 aa)
	MGYG_06006	NIMA interactive protein. (438 aa)
	MGYG_06093	40S ribosomal protein S19. (147 aa)
	MGYG_06199	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1091 aa)
	MGYG_06998	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (212 aa)
	MGYG_07204	WD40 domain-containing protein. (479 aa)
	MGYG_07222	Mis12 domain-containing protein. (324 aa)
	MGYG_06599	TTK protein kinase. (825 aa)
	MGYG_07416	Multiple RNA-binding domain-containing protein 1. (799 aa)
	MGYG_07517	Kinesin heavy chain isoform 5A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1193 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (100 aa)
	MGYG_07675	Elongation factor 2. (1068 aa)
	MGYG_07682	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (244 aa)
	MGYG_07733	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (190 aa)
	MGYG_07822	Anaphase spindle elongation protein. (782 aa)
	MGYG_07980	Non-specific serine/threonine protein kinase. (976 aa)
	MGYG_08170	Uncharacterized protein. (728 aa)
	MGYG_08355	Plk/plk-unclassified protein kinase. (1144 aa)
	MGYG_08611	PAB1-binding protein 1. (1161 aa)
	MGYG_00296	Uncharacterized protein. (684 aa)
	MGYG_01941	Cell division control protein 10; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (340 aa)
	MGYG_01985	ER membrane protein. (442 aa)
	MGYG_01226	Uncharacterized protein. (334 aa)
	MGYG_01264	Ribosome biogenesis protein SSF1. (442 aa)
	MGYG_01301	Spindle pole body component. (1008 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (289 aa)
	MGYG_00615	Phospholipid:diacylglycerol acyltransferase. (655 aa)
	MGYG_00773	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (152 aa)
	MGYG_01634	Serine/threonine protein kinase. (321 aa)
	MGYG_01000	EB1 protein. (242 aa)
	MGYG_01039	Uncharacterized protein. (316 aa)
	MGYG_01831	Uncharacterized protein. (515 aa)

Your Current Organism:

Nannizzia gypsea

NCBI taxonomy Id: 535722
Other names: Arthroderma gypseum CBS 118893, Microsporum gypseum CBS 118893, N. gypsea CBS 118893, Nannizzia gypsea CBS 118893

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	E4V3P3	E4UMY5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	MGYG_03178	E4V3P3	E4URB0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Topoisomerase II.	0.999
LSM3	MGYG_04476	E4V3P3	E4UT72	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.435
LSM3	MGYG_07675	E4V3P3	E4V3U5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Elongation factor 2.	0.705
LSM4	LSM3	E4UMY5	E4V3P3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM4	MGYG_03178	E4UMY5	E4URB0	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Topoisomerase II.	0.999
LSM4	MGYG_03339	E4UMY5	E4UN35	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nucleolysin TIA-1.	0.431
LSM4	MGYG_03825	E4UMY5	E4UU54	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.505
LSM4	MGYG_04476	E4UMY5	E4UT72	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.514
LSM4	MGYG_05350	E4UMY5	E4UVM6	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	30S ribosomal protein S28e.	0.408
LSM4	MGYG_07675	E4UMY5	E4V3U5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Elongation factor 2.	0.672
MGYG_00296	MGYG_01000	E5QYR7	E5R3E9	Uncharacterized protein.	EB1 protein.	0.912
MGYG_00296	MGYG_01831	E5QYR7	E5R3X0	Uncharacterized protein.	Uncharacterized protein.	0.691
MGYG_00296	MGYG_02035	E5QYR7	E4UPD4	Uncharacterized protein.	60S ribosomal protein L10-B.	0.576
MGYG_00296	MGYG_02567	E5QYR7	E4UN93	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.792
MGYG_00296	MGYG_02918	E5QYR7	E4UPT8	Uncharacterized protein.	Spindle pole body component.	0.404
MGYG_00296	MGYG_03530	E5QYR7	E4USF9	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.581
MGYG_00296	MGYG_04124	E5QYR7	E4UV03	Uncharacterized protein.	60S ribosomal protein L23a.	0.409
MGYG_00296	MGYG_05542	E5QYR7	E4UWF0	Uncharacterized protein.	CENP-T_C domain-containing protein.	0.448
MGYG_00296	MGYG_05959	E5QYR7	E4V023	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.497