(59 nodes) RNA recognition motif network (Nannizzia gypsea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MGYG_03105	CCCH zinc finger and RRM domain-containing protein. (732 aa)
	MGYG_03072	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (782 aa)
	MGYG_02269	RRM domain-containing protein. (152 aa)
	MGYG_02166	Nuclear cap-binding protein subunit 2. (167 aa)
	MGYG_02883	NTF2 and RRM domain-containing protein. (566 aa)
	MGYG_02023	RRM domain-containing protein. (304 aa)
	MGYG_02003	Pre-mRNA branch site protein p14. (116 aa)
	MGYG_08958	Uncharacterized protein. (552 aa)
	MGYG_02786	Splicing factor U2AF subunit. (209 aa)
	MGYG_02783	Uncharacterized protein. (395 aa)
	MGYG_02725	RNA-binding protein 8A. (160 aa)
	MGYG_03339	Nucleolysin TIA-1. (506 aa)
	MGYG_04890	Uncharacterized protein. (655 aa)
	MGYG_04754	U1 small nuclear ribonucleoprotein A. (186 aa)
	MGYG_05540	RNA binding protein. (368 aa)
	MGYG_05499	RRM domain-containing protein. (418 aa)
	MGYG_05193	Uncharacterized protein. (481 aa)
	MGYG_04073	Uncharacterized protein. (616 aa)
	MGYG_04027	Uncharacterized protein. (637 aa)
	MGYG_03781	Uncharacterized protein. (738 aa)
	MGYG_03738	Pre-mRNA-splicing factor cwc2. (402 aa)
	MGYG_04491	Splicing factor U2AF-associated protein 2. (388 aa)
	MGYG_04448	U2 snRNP component IST3. (280 aa)
	MGYG_03628	Uncharacterized protein. (361 aa)
	MGYG_04428	RNA binding domain-containing protein. (328 aa)
	MGYG_03148	Pumilio domain-containing protein. (993 aa)
	MGYG_03143	Differentiation 1 negative regulator. (839 aa)
	MGYG_05139	Uncharacterized protein. (304 aa)
	MGYG_05074	Nucleolar protein 12. (540 aa)
	MGYG_05804	U4/U6 snRNA-associated-splicing factor PRP24. (1329 aa)
	MGYG_05675	Nucleolar protein 13. (403 aa)
	MGYG_01871	Uncharacterized protein. (748 aa)
	MGYG_01823	MKI67 FHA domain-interacting nucleolar phosphoprotein. (507 aa)
	MGYG_01788	Lupus La protein. (418 aa)
	MGYG_00135	RRM domain-containing protein. (606 aa)
	MGYG_00597	RRM domain-containing protein. (922 aa)
	MGYG_01410	RING-type domain-containing protein. (1520 aa)
	MGYG_00574	RRM domain-containing protein. (997 aa)
	MGYG_00478	Uncharacterized protein. (435 aa)
	MGYG_01236	Uncharacterized protein. (371 aa)
	MGYG_01973	RRM domain-containing protein. (152 aa)
	MGYG_01912	RRM domain-containing protein. (196 aa)
	MGYG_08646	Polyadenylate-binding protein 2. (186 aa)
	MGYG_08546	RRM domain-containing protein. (365 aa)
	MGYG_08476	Pre-mRNA-splicing factor slt11. (389 aa)
	MGYG_08164	Actin cytoskeleton protein VIP1. (270 aa)
	TIF35	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (293 aa)
	MGYG_07815	Eukaryotic translation initiation factor 4H. (549 aa)
	MGYG_07680	U1 small nuclear ribonucleoprotein. (405 aa)
	MGYG_07416	Multiple RNA-binding domain-containing protein 1. (799 aa)
	MGYG_07158	RNA-binding protein rsd1. (589 aa)
	MGYG_06139	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (565 aa)
	MGYG_06129	RNA recognition domain-containing protein family protein. (305 aa)
	MGYG_05990	RRM domain-containing protein. (496 aa)
	MGYG_05892	RNA-binding post-transcriptional regulator csx1. (412 aa)
	MGYG_05886	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (463 aa)
	PRT1	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (745 aa)
	MGYG_06302	Splicing factor 3B subunit 4. (382 aa)
	MGYG_06202	U1 small nuclear ribonucleoprotein A. (256 aa)

Your Current Organism:

Nannizzia gypsea

NCBI taxonomy Id: 535722
Other names: Arthroderma gypseum CBS 118893, Microsporum gypseum CBS 118893, N. gypsea CBS 118893, Nannizzia gypsea CBS 118893

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MGYG_00135	MGYG_03072	E5R363	E4UQP7	RRM domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.454
MGYG_00135	PRT1	E5R363	E4UZL3	RRM domain-containing protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.489
MGYG_00478	MGYG_01236	E5QZX4	E5QZP9	Uncharacterized protein.	Uncharacterized protein.	0.926
MGYG_00478	MGYG_01912	E5QZX4	E5QYN5	Uncharacterized protein.	RRM domain-containing protein.	0.564
MGYG_00478	MGYG_02003	E5QZX4	E4UP50	Uncharacterized protein.	Pre-mRNA branch site protein p14.	0.529
MGYG_00478	MGYG_02023	E5QZX4	E4UPC3	Uncharacterized protein.	RRM domain-containing protein.	0.558
MGYG_00478	MGYG_02166	E5QZX4	E4UQ20	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.745
MGYG_00478	MGYG_02725	E5QZX4	E4UNV8	Uncharacterized protein.	RNA-binding protein 8A.	0.482
MGYG_00478	MGYG_03072	E5QZX4	E4UQP7	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.638
MGYG_00478	MGYG_04073	E5QZX4	E4UUV3	Uncharacterized protein.	Uncharacterized protein.	0.558
MGYG_00478	MGYG_04428	E5QZX4	E4USX3	Uncharacterized protein.	RNA binding domain-containing protein.	0.590
MGYG_00478	MGYG_04754	E5QZX4	E4UWJ7	Uncharacterized protein.	U1 small nuclear ribonucleoprotein A.	0.625
MGYG_00478	MGYG_06139	E5QZX4	E4V0K7	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.483
MGYG_00478	MGYG_06202	E5QZX4	E4UYM3	Uncharacterized protein.	U1 small nuclear ribonucleoprotein A.	0.625
MGYG_00478	MGYG_06302	E5QZX4	E4UYX2	Uncharacterized protein.	Splicing factor 3B subunit 4.	0.575
MGYG_00478	MGYG_07680	E5QZX4	E4V3V0	Uncharacterized protein.	U1 small nuclear ribonucleoprotein.	0.582
MGYG_00478	MGYG_08476	E5QZX4	E4V5T8	Uncharacterized protein.	Pre-mRNA-splicing factor slt11.	0.434
MGYG_00478	MGYG_08646	E5QZX4	E4V6K5	Uncharacterized protein.	Polyadenylate-binding protein 2.	0.422
MGYG_00478	PRT1	E5QZX4	E4UZL3	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.	0.465
MGYG_00478	TIF35	E5QZX4	E4V516	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.	0.540