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xylA xylA xylB xylB AKN29685.1 AKN29685.1 AKN29986.1 AKN29986.1 AKN30758.1 AKN30758.1 xylB-2 xylB-2 AKN30839.1 AKN30839.1 araD araD AKN30852.1 AKN30852.1 AKN30853.1 AKN30853.1 AKN33584.1 AKN33584.1 AKN33585.1 AKN33585.1 AKN33586.1 AKN33586.1 araD-2 araD-2 araA araA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xylAXylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (440 aa)
xylBXylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
AKN29685.1ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
AKN29986.1Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
AKN30758.1Fucose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
xylB-2Xylulose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
AKN30839.1Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
araDCatalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
AKN30852.1Ribulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)
AKN30853.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
AKN33584.1GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
AKN33585.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
AKN33586.1Sugar:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (451 aa)
araD-2Catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
araAArabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (488 aa)
Your Current Organism:
Clostridium carboxidivorans
NCBI taxonomy Id: 536227
Other names: C. carboxidivorans P7, Clostridium carboxidivorans P7, Clostridium carboxidivorans str. P7, Clostridium carboxidivorans strain P7
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