STRINGSTRING
AKN29407.1 AKN29407.1 AKN29410.1 AKN29410.1 coaD coaD AKN29463.1 AKN29463.1 AKN29475.1 AKN29475.1 pnp pnp AKN29538.1 AKN29538.1 glgC glgC polC polC AKN29651.1 AKN29651.1 AKN29913.1 AKN29913.1 AKN34120.1 AKN34120.1 AKN30327.1 AKN30327.1 AKN30649.1 AKN30649.1 dinB dinB selO selO AKN31127.1 AKN31127.1 AKN31243.1 AKN31243.1 AKN31456.1 AKN31456.1 mobA mobA AKN31738.1 AKN31738.1 AKN31803.1 AKN31803.1 AKN31945.1 AKN31945.1 AKN32131.1 AKN32131.1 nadD nadD AKN32320.1 AKN32320.1 polA polA AKN32351.1 AKN32351.1 AKN32367.1 AKN32367.1 AKN32436.1 AKN32436.1 AKN32516.1 AKN32516.1 AKN32583.1 AKN32583.1 AKN32608.1 AKN32608.1 AKN32671.1 AKN32671.1 rph rph AKN32859.1 AKN32859.1 dacA dacA AKN32929.1 AKN32929.1 rpoA rpoA rpoC rpoC rpoB rpoB ispD ispD disA disA glmU glmU AKN33115.1 AKN33115.1 AKN33139.1 AKN33139.1 dnaX dnaX AKN33193.1 AKN33193.1 AKN33202.1 AKN33202.1 AKN33262.1 AKN33262.1 AKN33287.1 AKN33287.1 AKN33299.1 AKN33299.1 AKN33385.1 AKN33385.1 AKN33563.1 AKN33563.1 AKN33568.1 AKN33568.1 AKN33635.1 AKN33635.1 dnaG dnaG AKN33789.1 AKN33789.1 AKN33968.1 AKN33968.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AKN29407.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
AKN29410.1DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (72 aa)
coaDPhosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (160 aa)
AKN29463.1CDP-diglyceride synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDS family. (265 aa)
AKN29475.1Riboflavin kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family. (312 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (709 aa)
AKN29538.1Glucose-1-phosphate adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
glgCGlucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (378 aa)
polCDNA polymerase III subunit alpha; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (1449 aa)
AKN29651.1ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
AKN29913.1ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (862 aa)
AKN34120.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
AKN30327.1DNA polymerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (998 aa)
AKN30649.1Cytidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1620 aa)
dinBDNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (397 aa)
selOHypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. (491 aa)
AKN31127.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
AKN31243.1Adenylylsulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (587 aa)
AKN31456.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
mobAMolybdopterin-guanine dinucleotide biosynthesis protein MobA; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor. (197 aa)
AKN31738.1Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
AKN31803.1Polynucleotide adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
AKN31945.1Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (298 aa)
AKN32131.1Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
nadDNicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (200 aa)
AKN32320.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1046 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. (880 aa)
AKN32351.1Sporulation protein Spo0E; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
AKN32367.1DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
AKN32436.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
AKN32516.1UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
AKN32583.1Zinc finger CHC2-family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
AKN32608.1Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
AKN32671.1Cobinamide kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (249 aa)
AKN32859.1DNA polymerase III subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (1192 aa)
dacAMembrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (282 aa)
AKN32929.1ACP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (315 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1179 aa)
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1232 aa)
ispD2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP). (228 aa)
disADNA integrity scanning protein DisA; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation; upon encountering a lesion, the DisA focus arrests at the damaged site and halts c-di-AMP synthesis. (357 aa)
glmUGlucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. (456 aa)
AKN33115.1Delta-lactam-biosynthetic de-N-acetylase; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family. (661 aa)
AKN33139.1DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (367 aa)
dnaXDNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (541 aa)
AKN33193.1DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
AKN33202.1tRNA nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (405 aa)
AKN33262.1Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
AKN33287.1Queuosine synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
AKN33299.1tRNA threonylcarbamoyladenosine biosynthesis protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (350 aa)
AKN33385.1RNA polymerase sigma54 factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
AKN33563.1UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
AKN33568.1Glucose-1-phosphate nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (813 aa)
AKN33635.1DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (587 aa)
AKN33789.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
AKN33968.1RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (241 aa)
Your Current Organism:
Clostridium carboxidivorans
NCBI taxonomy Id: 536227
Other names: C. carboxidivorans P7, Clostridium carboxidivorans P7, Clostridium carboxidivorans str. P7, Clostridium carboxidivorans strain P7
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