(31 nodes) Carotenoid biosynthesis network (Nannocystis exedens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFE97462.1	Isorenieratene synthase. (521 aa)
	SFF23521.1	Uncharacterized membrane protein. (216 aa)
	SFF19657.1	O-methyltransferase. (350 aa)
	SFE97505.1	All-trans-retinol 13,14-reductase. (536 aa)
	SFE97423.1	1-hydroxycarotenoid 3,4-desaturase. (521 aa)
	SFE97405.1	Carotenoid 1,2-hydratase. (273 aa)
	SFE97050.1	Ubiquinone/menaquinone biosynthesis C-methylase UbiE. (353 aa)
	SFE95600.1	Zeta-carotene desaturase. (455 aa)
	SFE94059.1	UDP:flavonoid glycosyltransferase YjiC, YdhE family. (436 aa)
	SFE93977.1	O-methyltransferase. (375 aa)
	SFE93960.1	Demethylspheroidene O-methyltransferase. (348 aa)
	SFE81419.1	Fatty acid desaturase. (335 aa)
	SFE74001.1	15-cis-phytoene desaturase. (499 aa)
	SFE68505.1	Phytoene dehydrogenase-related protein. (516 aa)
	SFF40968.1	Glycosyltransferase, MGT family. (390 aa)
	SFF39936.1	Phytoene dehydrogenase-related protein. (474 aa)
	SFE32667.1	Acetoacetate decarboxylase (ADC). (1020 aa)
	SFE30489.1	NAD(P)-binding Rossmann-like domain-containing protein. (1033 aa)
	SFE13218.1	Spheroidene monooxygenase. (247 aa)
	SFE06032.1	Fatty acid desaturase. (307 aa)
	SFE01812.1	Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase. (393 aa)
	SFE00093.1	Phytoene dehydrogenase-related protein. (507 aa)
	SFD85903.1	Fatty acid desaturase. (309 aa)
	SFD84010.1	Uncharacterized membrane protein. (236 aa)
	SFD79074.1	Phytoene synthase. (330 aa)
	SFD79050.1	Phytoene desaturase. (508 aa)
	SFD76803.1	Lycopene beta-cyclase. (392 aa)
	SFD52760.1	Squalene-associated FAD-dependent desaturase. (450 aa)
	SFD52742.1	Farnesyl-diphosphate farnesyltransferase. (305 aa)
	SFD52729.1	Squalene synthase HpnC. (324 aa)
	SFD51822.1	NAD(P)-binding Rossmann-like domain-containing protein. (711 aa)

Your Current Organism:

Nannocystis exedens

NCBI taxonomy Id: 54
Other names: ATCC 25963, DSM 71, N. exedens

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFD52729.1	SFD52742.1	SAMN02745121_00441	SAMN02745121_00442	Squalene synthase HpnC.	Farnesyl-diphosphate farnesyltransferase.	0.936
SFD52729.1	SFD52760.1	SAMN02745121_00441	SAMN02745121_00443	Squalene synthase HpnC.	Squalene-associated FAD-dependent desaturase.	0.938
SFD52729.1	SFD79050.1	SAMN02745121_00441	SAMN02745121_01610	Squalene synthase HpnC.	Phytoene desaturase.	0.902
SFD52729.1	SFD79074.1	SAMN02745121_00441	SAMN02745121_01611	Squalene synthase HpnC.	Phytoene synthase.	0.739
SFD52729.1	SFE00093.1	SAMN02745121_00441	SAMN02745121_02611	Squalene synthase HpnC.	Phytoene dehydrogenase-related protein.	0.742
SFD52729.1	SFE01812.1	SAMN02745121_00441	SAMN02745121_02703	Squalene synthase HpnC.	Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.	0.436
SFD52729.1	SFE68505.1	SAMN02745121_00441	SAMN02745121_05179	Squalene synthase HpnC.	Phytoene dehydrogenase-related protein.	0.719
SFD52729.1	SFE74001.1	SAMN02745121_00441	SAMN02745121_05373	Squalene synthase HpnC.	15-cis-phytoene desaturase.	0.848
SFD52729.1	SFE93960.1	SAMN02745121_00441	SAMN02745121_06140	Squalene synthase HpnC.	Demethylspheroidene O-methyltransferase.	0.540
SFD52729.1	SFE95600.1	SAMN02745121_00441	SAMN02745121_06248	Squalene synthase HpnC.	Zeta-carotene desaturase.	0.845
SFD52729.1	SFE97405.1	SAMN02745121_00441	SAMN02745121_06305	Squalene synthase HpnC.	Carotenoid 1,2-hydratase.	0.546
SFD52729.1	SFE97423.1	SAMN02745121_00441	SAMN02745121_06306	Squalene synthase HpnC.	1-hydroxycarotenoid 3,4-desaturase.	0.903
SFD52729.1	SFE97462.1	SAMN02745121_00441	SAMN02745121_06309	Squalene synthase HpnC.	Isorenieratene synthase.	0.544
SFD52729.1	SFE97505.1	SAMN02745121_00441	SAMN02745121_06312	Squalene synthase HpnC.	All-trans-retinol 13,14-reductase.	0.831
SFD52729.1	SFF39936.1	SAMN02745121_00441	SAMN02745121_08605	Squalene synthase HpnC.	Phytoene dehydrogenase-related protein.	0.683
SFD52742.1	SFD52729.1	SAMN02745121_00442	SAMN02745121_00441	Farnesyl-diphosphate farnesyltransferase.	Squalene synthase HpnC.	0.936
SFD52742.1	SFD52760.1	SAMN02745121_00442	SAMN02745121_00443	Farnesyl-diphosphate farnesyltransferase.	Squalene-associated FAD-dependent desaturase.	0.989
SFD52742.1	SFD76803.1	SAMN02745121_00442	SAMN02745121_01478	Farnesyl-diphosphate farnesyltransferase.	Lycopene beta-cyclase.	0.423
SFD52742.1	SFD79050.1	SAMN02745121_00442	SAMN02745121_01610	Farnesyl-diphosphate farnesyltransferase.	Phytoene desaturase.	0.976
SFD52742.1	SFD79074.1	SAMN02745121_00442	SAMN02745121_01611	Farnesyl-diphosphate farnesyltransferase.	Phytoene synthase.	0.807