(18 nodes) Mixed, incl. Antiporter activity, and Ferredoxin hydrogenase complex network (Thermococcus chitonophagus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CUX77376.1	Na(+) H(+) antiporter subunit D. (492 aa)
	CUX77377.1	Putative multisubunit Na+/H+ antiporter. (89 aa)
	CUX77378.1	Putative Na(+) H(+) antiporter subunit B. (127 aa)
	CUX77379.1	Putative multisubunit Na+/H+ antiporter. (152 aa)
	CHITON_0602	Na(+) H(+) antiporter subunit E. (201 aa)
	CUX78421.1	Membrane bound hydrogenase, 4Fe-4S cluster-binding subunit MbhN. (141 aa)
	CUX78422.1	Membrane bound hydrogenase, MbhM subunit. (321 aa)
	CUX78423.1	Membrane bound hydrogenase, NiFe-hydrogenase large subunit MbhL. (430 aa)
	CUX78424.1	Membrane bound hydrogenase, NiFe-hydrogenase MbhK. (172 aa)
	CUX78425.1	Membrane bound hydrogenase, NiFe-hydrogenase small subunit MbJ. (173 aa)
	CUX78426.1	Membrane bound hydrogenase, MbhI subunit. (115 aa)
	CUX78427.1	Membrane bound hydrogenase, MbhH subunit. (509 aa)
	CUX78428.1	Membrane bound hydrogenase, MbhG subunit. (117 aa)
	CUX78429.1	Membrane bound hydrogenase, MbhF subunit. (228 aa)
	CUX78430.1	Membrane bound hydrogenase, MbhD subunit. (85 aa)
	CUX78431.1	Membrane bound hydrogenase, MbhC subunit. (122 aa)
	CUX78432.1	Membrane bound hydrogenase, MbhB subunit. (83 aa)
	CUX78433.1	Membrane bound hydrogenase, MbhA subunit. (167 aa)

Your Current Organism:

Thermococcus chitonophagus

NCBI taxonomy Id: 54262
Other names: DSM 10152, T. chitonophagus, strain GC74

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHITON_0602	CUX77376.1	CHITON_0602	CHITON_0597	Na(+) H(+) antiporter subunit E.	Na(+) H(+) antiporter subunit D.	0.784
CHITON_0602	CUX77377.1	CHITON_0602	CHITON_0598	Na(+) H(+) antiporter subunit E.	Putative multisubunit Na+/H+ antiporter.	0.874
CHITON_0602	CUX77378.1	CHITON_0602	CHITON_0599	Na(+) H(+) antiporter subunit E.	Putative Na(+) H(+) antiporter subunit B.	0.852
CHITON_0602	CUX77379.1	CHITON_0602	CHITON_0600	Na(+) H(+) antiporter subunit E.	Putative multisubunit Na+/H+ antiporter.	0.791
CHITON_0602	CUX78427.1	CHITON_0602	CHITON_1648	Na(+) H(+) antiporter subunit E.	Membrane bound hydrogenase, MbhH subunit.	0.724
CHITON_0602	CUX78428.1	CHITON_0602	CHITON_1649	Na(+) H(+) antiporter subunit E.	Membrane bound hydrogenase, MbhG subunit.	0.887
CHITON_0602	CUX78429.1	CHITON_0602	CHITON_1650	Na(+) H(+) antiporter subunit E.	Membrane bound hydrogenase, MbhF subunit.	0.729
CHITON_0602	CUX78430.1	CHITON_0602	CHITON_1651	Na(+) H(+) antiporter subunit E.	Membrane bound hydrogenase, MbhD subunit.	0.724
CHITON_0602	CUX78431.1	CHITON_0602	CHITON_1652	Na(+) H(+) antiporter subunit E.	Membrane bound hydrogenase, MbhC subunit.	0.871
CHITON_0602	CUX78432.1	CHITON_0602	CHITON_1653	Na(+) H(+) antiporter subunit E.	Membrane bound hydrogenase, MbhB subunit.	0.820
CUX77376.1	CHITON_0602	CHITON_0597	CHITON_0602	Na(+) H(+) antiporter subunit D.	Na(+) H(+) antiporter subunit E.	0.784
CUX77376.1	CUX77377.1	CHITON_0597	CHITON_0598	Na(+) H(+) antiporter subunit D.	Putative multisubunit Na+/H+ antiporter.	0.951
CUX77376.1	CUX77378.1	CHITON_0597	CHITON_0599	Na(+) H(+) antiporter subunit D.	Putative Na(+) H(+) antiporter subunit B.	0.936
CUX77376.1	CUX77379.1	CHITON_0597	CHITON_0600	Na(+) H(+) antiporter subunit D.	Putative multisubunit Na+/H+ antiporter.	0.936
CUX77376.1	CUX78421.1	CHITON_0597	CHITON_1642	Na(+) H(+) antiporter subunit D.	Membrane bound hydrogenase, 4Fe-4S cluster-binding subunit MbhN.	0.520
CUX77376.1	CUX78422.1	CHITON_0597	CHITON_1643	Na(+) H(+) antiporter subunit D.	Membrane bound hydrogenase, MbhM subunit.	0.788
CUX77376.1	CUX78423.1	CHITON_0597	CHITON_1644	Na(+) H(+) antiporter subunit D.	Membrane bound hydrogenase, NiFe-hydrogenase large subunit MbhL.	0.751
CUX77376.1	CUX78424.1	CHITON_0597	CHITON_1645	Na(+) H(+) antiporter subunit D.	Membrane bound hydrogenase, NiFe-hydrogenase MbhK.	0.407
CUX77376.1	CUX78425.1	CHITON_0597	CHITON_1646	Na(+) H(+) antiporter subunit D.	Membrane bound hydrogenase, NiFe-hydrogenase small subunit MbJ.	0.719
CUX77376.1	CUX78428.1	CHITON_0597	CHITON_1649	Na(+) H(+) antiporter subunit D.	Membrane bound hydrogenase, MbhG subunit.	0.808