19 items (Thermococcus chitonophagus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CHITON_0543	ATP pyrophosphatase. (211 aa)
	CUX77323.1	CRISPR-associated RAMP Cmr1. (432 aa)
	CUX77324.1	CRISPR-associated RAMP Cmr2. (957 aa)
	CUX77325.1	CRISPR-associated RAMP Cmr3. (335 aa)
	CUX77326.1	Hypothetical protein. (329 aa)
	CUX77327.1	CRISPR-associated protein, Csx3 family. (99 aa)
	CUX77328.1	CRISPR-associated RAMP Cmr4. (294 aa)
	CUX77329.1	CRISPR-associated RAMP Cmr5. (145 aa)
	CUX77330.1	CRISPR-associated RAMP Cmr6. (335 aa)
	CHITON_1037	CRISPR-associated RAMP Cmr6. (353 aa)
	CUX77817.1	Hypothetical protein. (240 aa)
	CUX77818.1	CRISPR-associated RAMP Cmr4. (383 aa)
	CUX77819.1	CRISPR-associated protein DxTHG. (479 aa)
	CUX77820.1	CRISPR-associated RAMP Cmr3. (356 aa)
	CUX77821.1	CRISPR-associated RAMP Cmr2. (1061 aa)
	CUX77822.1	CRISPR-associated RAMP Cmr1. (303 aa)
	CUX77823.1	CRISPR repeat RNA endoribonuclease Cas6. (270 aa)
	CUX77824.1	Putative carbamoyl transferase. (534 aa)
	CUX77825.1	Hypothetical protein. (68 aa)

Your Current Organism:

Thermococcus chitonophagus

NCBI taxonomy Id: 54262
Other names: DSM 10152, T. chitonophagus, strain GC74

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHITON_0543	CUX77323.1	CHITON_0543	CHITON_0544	ATP pyrophosphatase.	CRISPR-associated RAMP Cmr1.	0.505
CHITON_0543	CUX77324.1	CHITON_0543	CHITON_0545	ATP pyrophosphatase.	CRISPR-associated RAMP Cmr2.	0.505
CHITON_0543	CUX77325.1	CHITON_0543	CHITON_0546	ATP pyrophosphatase.	CRISPR-associated RAMP Cmr3.	0.505
CHITON_0543	CUX77326.1	CHITON_0543	CHITON_0547	ATP pyrophosphatase.	Hypothetical protein.	0.505
CHITON_0543	CUX77327.1	CHITON_0543	CHITON_0548	ATP pyrophosphatase.	CRISPR-associated protein, Csx3 family.	0.505
CHITON_0543	CUX77328.1	CHITON_0543	CHITON_0549	ATP pyrophosphatase.	CRISPR-associated RAMP Cmr4.	0.505
CHITON_0543	CUX77329.1	CHITON_0543	CHITON_0550	ATP pyrophosphatase.	CRISPR-associated RAMP Cmr5.	0.496
CHITON_0543	CUX77330.1	CHITON_0543	CHITON_0551	ATP pyrophosphatase.	CRISPR-associated RAMP Cmr6.	0.496
CHITON_1037	CUX77323.1	CHITON_1037	CHITON_0544	CRISPR-associated RAMP Cmr6.	CRISPR-associated RAMP Cmr1.	0.867
CHITON_1037	CUX77324.1	CHITON_1037	CHITON_0545	CRISPR-associated RAMP Cmr6.	CRISPR-associated RAMP Cmr2.	0.901
CHITON_1037	CUX77325.1	CHITON_1037	CHITON_0546	CRISPR-associated RAMP Cmr6.	CRISPR-associated RAMP Cmr3.	0.802
CHITON_1037	CUX77328.1	CHITON_1037	CHITON_0549	CRISPR-associated RAMP Cmr6.	CRISPR-associated RAMP Cmr4.	0.899
CHITON_1037	CUX77329.1	CHITON_1037	CHITON_0550	CRISPR-associated RAMP Cmr6.	CRISPR-associated RAMP Cmr5.	0.895
CHITON_1037	CUX77817.1	CHITON_1037	CHITON_1038	CRISPR-associated RAMP Cmr6.	Hypothetical protein.	0.903
CHITON_1037	CUX77818.1	CHITON_1037	CHITON_1039	CRISPR-associated RAMP Cmr6.	CRISPR-associated RAMP Cmr4.	0.975
CHITON_1037	CUX77819.1	CHITON_1037	CHITON_1040	CRISPR-associated RAMP Cmr6.	CRISPR-associated protein DxTHG.	0.798
CHITON_1037	CUX77820.1	CHITON_1037	CHITON_1041	CRISPR-associated RAMP Cmr6.	CRISPR-associated RAMP Cmr3.	0.952
CHITON_1037	CUX77821.1	CHITON_1037	CHITON_1042	CRISPR-associated RAMP Cmr6.	CRISPR-associated RAMP Cmr2.	0.976
CHITON_1037	CUX77822.1	CHITON_1037	CHITON_1043	CRISPR-associated RAMP Cmr6.	CRISPR-associated RAMP Cmr1.	0.877
CHITON_1037	CUX77823.1	CHITON_1037	CHITON_1044	CRISPR-associated RAMP Cmr6.	CRISPR repeat RNA endoribonuclease Cas6.	0.828