6 items (Thermococcus chitonophagus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CUX77323.1	CRISPR-associated RAMP Cmr1. (432 aa)
	CUX77324.1	CRISPR-associated RAMP Cmr2. (957 aa)
	CUX77325.1	CRISPR-associated RAMP Cmr3. (335 aa)
	CUX77328.1	CRISPR-associated RAMP Cmr4. (294 aa)
	CUX77329.1	CRISPR-associated RAMP Cmr5. (145 aa)
	CUX77330.1	CRISPR-associated RAMP Cmr6. (335 aa)

Your Current Organism:

Thermococcus chitonophagus

NCBI taxonomy Id: 54262
Other names: DSM 10152, T. chitonophagus, strain GC74

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUX77323.1	CUX77324.1	CHITON_0544	CHITON_0545	CRISPR-associated RAMP Cmr1.	CRISPR-associated RAMP Cmr2.	0.966
CUX77323.1	CUX77325.1	CHITON_0544	CHITON_0546	CRISPR-associated RAMP Cmr1.	CRISPR-associated RAMP Cmr3.	0.970
CUX77323.1	CUX77328.1	CHITON_0544	CHITON_0549	CRISPR-associated RAMP Cmr1.	CRISPR-associated RAMP Cmr4.	0.972
CUX77323.1	CUX77329.1	CHITON_0544	CHITON_0550	CRISPR-associated RAMP Cmr1.	CRISPR-associated RAMP Cmr5.	0.964
CUX77323.1	CUX77330.1	CHITON_0544	CHITON_0551	CRISPR-associated RAMP Cmr1.	CRISPR-associated RAMP Cmr6.	0.966
CUX77324.1	CUX77323.1	CHITON_0545	CHITON_0544	CRISPR-associated RAMP Cmr2.	CRISPR-associated RAMP Cmr1.	0.966
CUX77324.1	CUX77325.1	CHITON_0545	CHITON_0546	CRISPR-associated RAMP Cmr2.	CRISPR-associated RAMP Cmr3.	0.985
CUX77324.1	CUX77328.1	CHITON_0545	CHITON_0549	CRISPR-associated RAMP Cmr2.	CRISPR-associated RAMP Cmr4.	0.979
CUX77324.1	CUX77329.1	CHITON_0545	CHITON_0550	CRISPR-associated RAMP Cmr2.	CRISPR-associated RAMP Cmr5.	0.973
CUX77324.1	CUX77330.1	CHITON_0545	CHITON_0551	CRISPR-associated RAMP Cmr2.	CRISPR-associated RAMP Cmr6.	0.975
CUX77325.1	CUX77323.1	CHITON_0546	CHITON_0544	CRISPR-associated RAMP Cmr3.	CRISPR-associated RAMP Cmr1.	0.970
CUX77325.1	CUX77324.1	CHITON_0546	CHITON_0545	CRISPR-associated RAMP Cmr3.	CRISPR-associated RAMP Cmr2.	0.985
CUX77325.1	CUX77328.1	CHITON_0546	CHITON_0549	CRISPR-associated RAMP Cmr3.	CRISPR-associated RAMP Cmr4.	0.958
CUX77325.1	CUX77329.1	CHITON_0546	CHITON_0550	CRISPR-associated RAMP Cmr3.	CRISPR-associated RAMP Cmr5.	0.949
CUX77325.1	CUX77330.1	CHITON_0546	CHITON_0551	CRISPR-associated RAMP Cmr3.	CRISPR-associated RAMP Cmr6.	0.950
CUX77328.1	CUX77323.1	CHITON_0549	CHITON_0544	CRISPR-associated RAMP Cmr4.	CRISPR-associated RAMP Cmr1.	0.972
CUX77328.1	CUX77324.1	CHITON_0549	CHITON_0545	CRISPR-associated RAMP Cmr4.	CRISPR-associated RAMP Cmr2.	0.979
CUX77328.1	CUX77325.1	CHITON_0549	CHITON_0546	CRISPR-associated RAMP Cmr4.	CRISPR-associated RAMP Cmr3.	0.958
CUX77328.1	CUX77329.1	CHITON_0549	CHITON_0550	CRISPR-associated RAMP Cmr4.	CRISPR-associated RAMP Cmr5.	0.977
CUX77328.1	CUX77330.1	CHITON_0549	CHITON_0551	CRISPR-associated RAMP Cmr4.	CRISPR-associated RAMP Cmr6.	0.974